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The map label for this gene is bkdR [H]

Identifier: 52842725

GI number: 52842725

Start: 2845298

End: 2845771

Strand: Direct

Name: bkdR [H]

Synonym: lpg2517

Alternate gene names: 52842725

Gene position: 2845298-2845771 (Clockwise)

Preceding gene: 52842719

Following gene: 52842726

Centisome position: 83.74

GC content: 37.55

Gene sequence:

>474_bases
ATGATACTCGATCGTACTGATAAAAAAATACTTGAAATACTGCAAGCAAATTGCGAAATCAATAACCAGGAATTGGCCGA
CCTTGTGGCCTTGTCTCCTTCGTCCTGTTTGCGTCGAGTCAAATTATTAATAGATAATGGTTATATCAAGAAACAGGTTG
CCCTGCTTGAGCCAGAAAAAGTAGGGTTAAAATTGACTGTTATTGTTTTAGTAGGGTTAAACAATCACCAGCCTGAGGTT
ATGAATCAATTTGAAAAAACCATACAACTTTTTCCGGAAGTCATTCAATGCTACTTGATTACAGGCCAATCTGCTGATTA
TTTATTGAAGATAATTGTGCCTGATTTAAACGCTTATCAAGCTTTTTTATTAGGCAAATTAACACGCATCAATGGCGTTG
CAAGTGTTCACTCCAGCTTTATATTACGCAATGTTTCTGACACGACCGCCCTACCCCTTGATCATTTGGATTAG

Upstream 100 bases:

>100_bases
ATAAAACCCTTTTTTTTGATTTTAAATTCTAATTTAATATATTTTTTTGGAATATAATTCTATAATAAGAAATATAAGTG
CCATTTTCATTGCATAAAAT

Downstream 100 bases:

>100_bases
GGCACTGCTCTTCGAATATTAAATTATTCAATAAATACTAACTCGAAAGTACCTGGCTCTGCCTATAAAATCAAAAATTC
TATAAAAATAGATAAAAATA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MILDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEKVGLKLTVIVLVGLNNHQPEV
MNQFEKTIQLFPEVIQCYLITGQSADYLLKIIVPDLNAYQAFLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD

Sequences:

>Translated_157_residues
MILDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEKVGLKLTVIVLVGLNNHQPEV
MNQFEKTIQLFPEVIQCYLITGQSADYLLKIIVPDLNAYQAFLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD
>Mature_157_residues
MILDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEKVGLKLTVIVLVGLNNHQPEV
MNQFEKTIQLFPEVIQCYLITGQSADYLLKIIVPDLNAYQAFLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=153, Percent_Identity=35.9477124183007, Blast_Score=111, Evalue=2e-26,
Organism=Escherichia coli, GI1787116, Length=149, Percent_Identity=38.9261744966443, Blast_Score=106, Evalue=9e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17566; Mature: 17566

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEK
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHEEECCCC
VGLKLTVIVLVGLNNHQPEVMNQFEKTIQLFPEVIQCYLITGQSADYLLKIIVPDLNAYQ
CCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHH
AFLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MILDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLIDNGYIKKQVALLEPEK
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHEEECCCC
VGLKLTVIVLVGLNNHQPEVMNQFEKTIQLFPEVIQCYLITGQSADYLLKIIVPDLNAYQ
CCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHH
AFLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]