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The map label for this gene is tnpA [H]

Identifier: 52842572

GI number: 52842572

Start: 2668117

End: 2669316

Strand: Reverse

Name: tnpA [H]

Synonym: lpg2363

Alternate gene names: 52842572

Gene position: 2669316-2668117 (Counterclockwise)

Preceding gene: 52842574

Following gene: 52842567

Centisome position: 78.56

GC content: 39.67

Gene sequence:

>1200_bases
TTGACGGTCAAAAGGAAGATTAAAATGCCTAAGAAAGATTGTATCCTAAATTTGCCAGGATATTCTATTAAAAAAGTGAG
CGGAGAGAACCCGGTTTATATTGAAGTAAACTATCGTTGTGTTGTTCGTTGTATTCATTGTGGTAATAAAAAATTACGCG
TAAAAGACAGTTTTATAAGACGTATACGTCATGAGTCTATTGGTTTACGTCGTAGCTATTTATGCTTAAAGGCGCATAAA
TATTATTGTCCTTCTTGCGGACGTTATTTTAATCAACGCTTTCCGGGGATAGGTAAGTATCAAAGAGCCAGCGAGAGTTT
GCGTAAACAGGTGTTTCACTATCACAGCAAAGGAGTCAGTCAAAAGGATTTGGCGCGCGACTTAAAGCTGGGTAAATCGA
CGGTAGAGCGCTGGTATCATTATGGTTATGAGCTTCGCTATAAGAAGATAGCGACTCGTTCCTGCCCCCGAGTATTAGGA
CTTGATGAGCATTCATTTAATAGAAAGGTGGGTTATGCTACAACCTTTTGTGACTTGGCCAAACATAAAATATTTGATGT
AGTTGAGGGGCGCTCAGAAAAGGACTTAGAGAGCTACCTTAATACCTTGGAAGGAAAAGAGAAAGTACAGGTAGTCTGTA
TTGACTTAAGCTCGAGTTACCGCAAGTTGATCAGGCATTACTTTCCCAATGCCATGATTGTTGCCGATCGCTTTCATGTG
ATTCGTTTATTGAATCAACTCTGTTTGCAGACTTATCAGCAGATTGATCCCGAAATGAAGTATCAGCGAGGCCTCTTGGC
CGCATTGAGAACTAATCCTAATAATCTCACGGTAAAGCGACTCAATAGACGAGAACGTTATTTGCAACAGCAGCCTGTCA
TTGCTGCAATATATTACTTTAAACAGCGATTACATCGGCTTCTCATGCGAAAACATCGTACCGCAAAACAGTGTACGCGT
TTAATACCTCTCTTTCTTAAACTGGTTGCCAGTCTGAAAGAAAGCCCTTTTGAATCACTCAAAACGTTAGGTAAAACATT
ATATCAATGGCGGGAAGAAGTAGTTAGAATGTGGCGGTTTACTAAAAACAACGGCATTACTGAAGGCTTTCATCGTAAGA
TGAAACTGATTCAACGGCGTGCTTATGGGTTTAGAAATTTTGAAAATTACAGGTTAAGGGTTAAAGTTTTGTGTTCTTGA

Upstream 100 bases:

>100_bases
TCCCATAATCCCATAAGAATAAGATATAATATTCAAAACTTGGGCTCTACCCCAACAAAGGGGGCATTTTAATCAAGTTA
GTCTAGACTAACCCTTTGAT

Downstream 100 bases:

>100_bases
TTAGCGCCCCCGGAAATGGGAAGAGCCAAGACCCCTTTATTTTCTGTCTACATTGCGTCTACATGACTTTTTCGAATTTT
CTAAAACTACCGTAACTACT

Product: transposase (IS652)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTVKRKIKMPKKDCILNLPGYSIKKVSGENPVYIEVNYRCVVRCIHCGNKKLRVKDSFIRRIRHESIGLRRSYLCLKAHK
YYCPSCGRYFNQRFPGIGKYQRASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLG
LDEHSFNRKVGYATTFCDLAKHKIFDVVEGRSEKDLESYLNTLEGKEKVQVVCIDLSSSYRKLIRHYFPNAMIVADRFHV
IRLLNQLCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKRLNRRERYLQQQPVIAAIYYFKQRLHRLLMRKHRTAKQCTR
LIPLFLKLVASLKESPFESLKTLGKTLYQWREEVVRMWRFTKNNGITEGFHRKMKLIQRRAYGFRNFENYRLRVKVLCS

Sequences:

>Translated_399_residues
MTVKRKIKMPKKDCILNLPGYSIKKVSGENPVYIEVNYRCVVRCIHCGNKKLRVKDSFIRRIRHESIGLRRSYLCLKAHK
YYCPSCGRYFNQRFPGIGKYQRASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLG
LDEHSFNRKVGYATTFCDLAKHKIFDVVEGRSEKDLESYLNTLEGKEKVQVVCIDLSSSYRKLIRHYFPNAMIVADRFHV
IRLLNQLCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKRLNRRERYLQQQPVIAAIYYFKQRLHRLLMRKHRTAKQCTR
LIPLFLKLVASLKESPFESLKTLGKTLYQWREEVVRMWRFTKNNGITEGFHRKMKLIQRRAYGFRNFENYRLRVKVLCS
>Mature_398_residues
TVKRKIKMPKKDCILNLPGYSIKKVSGENPVYIEVNYRCVVRCIHCGNKKLRVKDSFIRRIRHESIGLRRSYLCLKAHKY
YCPSCGRYFNQRFPGIGKYQRASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGL
DEHSFNRKVGYATTFCDLAKHKIFDVVEGRSEKDLESYLNTLEGKEKVQVVCIDLSSSYRKLIRHYFPNAMIVADRFHVI
RLLNQLCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKRLNRRERYLQQQPVIAAIYYFKQRLHRLLMRKHRTAKQCTRL
IPLFLKLVASLKESPFESLKTLGKTLYQWREEVVRMWRFTKNNGITEGFHRKMKLIQRRAYGFRNFENYRLRVKVLCS

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 47587; Mature: 47455

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKRKIKMPKKDCILNLPGYSIKKVSGENPVYIEVNYRCVVRCIHCGNKKLRVKDSFIR
CCCCCCCCCCHHHCEEECCCCCEEEECCCCCEEEEECHHHHHHHHHCCCCCEEEHHHHHH
RIRHESIGLRRSYLCLKAHKYYCPSCGRYFNQRFPGIGKYQRASESLRKQVFHYHSKGVS
HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
QKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGLDEHSFNRKVGYATTFCDLA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
KHKIFDVVEGRSEKDLESYLNTLEGKEKVQVVCIDLSSSYRKLIRHYFPNAMIVADRFHV
HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEHHHHHH
IRLLNQLCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKRLNRRERYLQQQPVIAAIYYF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
KQRLHRLLMRKHRTAKQCTRLIPLFLKLVASLKESPFESLKTLGKTLYQWREEVVRMWRF
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
TKNNGITEGFHRKMKLIQRRAYGFRNFENYRLRVKVLCS
HCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
>Mature Secondary Structure 
TVKRKIKMPKKDCILNLPGYSIKKVSGENPVYIEVNYRCVVRCIHCGNKKLRVKDSFIR
CCCCCCCCCHHHCEEECCCCCEEEECCCCCEEEEECHHHHHHHHHCCCCCEEEHHHHHH
RIRHESIGLRRSYLCLKAHKYYCPSCGRYFNQRFPGIGKYQRASESLRKQVFHYHSKGVS
HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
QKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGLDEHSFNRKVGYATTFCDLA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
KHKIFDVVEGRSEKDLESYLNTLEGKEKVQVVCIDLSSSYRKLIRHYFPNAMIVADRFHV
HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEHHHHHH
IRLLNQLCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKRLNRRERYLQQQPVIAAIYYF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
KQRLHRLLMRKHRTAKQCTRLIPLFLKLVASLKESPFESLKTLGKTLYQWREEVVRMWRF
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
TKNNGITEGFHRKMKLIQRRAYGFRNFENYRLRVKVLCS
HCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]