Click here to switch to the map view.

The map label for this gene is comF [H]

Identifier: 52842542

GI number: 52842542

Start: 2635647

End: 2636246

Strand: Direct

Name: comF [H]

Synonym: lpg2332

Alternate gene names: 52842542

Gene position: 2635647-2636246 (Clockwise)

Preceding gene: 52842540

Following gene: 52842545

Centisome position: 77.57

GC content: 37.67

Gene sequence:

>600_bases
ATGGAGTTTATGAAACAACTTGGATCTTGCTGTCAATACTGTGCCTACCCCCTTTCTGATGATACGTATCTGGTTTGTGG
TCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTTGAAGAACCTCTGCGTAGTTTAATAC
ATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACTTCTTAATGCCTTACCCAAAAACGCA
TTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAAGGGGATTTAACCAGGCTGGTGTATT
AACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAAAAAATAATCAATACCGCTTCACAAG
CCAACCTTGATGGAGAGCAACGAAGGAAAAATTTACGTCATGCTTTTTATGTATCAGCTGTAACTTATGAACACGTTATG
ATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACATTAAAAAATGCTGGAGTTAAGAGAGT
AGATATATGTTGTTGTGCGCGGGCTGTAACTAAAAATTAA

Upstream 100 bases:

>100_bases
CCAAAAATTATTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAGCCAAC
TTGCAGTTTGCTCTAATTGC

Downstream 100 bases:

>100_bases
AAGGCAGCCCGTACCTATGAGTCCACTGTCAATGGTGTAAATATCGATTCAAATCATTCATTAATAAATGCACTAACAAA
ACACAAAATAGAATAATCAT

Product: competence protein ComF

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRFEEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKNA
LKPDCLIPVPMHPKRLKRRGFNQAGVLTRLLARQLNIPYDLYYCQKIINTASQANLDGEQRRKNLRHAFYVSAVTYEHVM
IVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Sequences:

>Translated_199_residues
MEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRFEEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKNA
LKPDCLIPVPMHPKRLKRRGFNQAGVLTRLLARQLNIPYDLYYCQKIINTASQANLDGEQRRKNLRHAFYVSAVTYEHVM
IVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN
>Mature_199_residues
MEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRFEEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKNA
LKPDCLIPVPMHPKRLKRRGFNQAGVLTRLLARQLNIPYDLYYCQKIINTASQANLDGEQRRKNLRHAFYVSAVTYEHVM
IVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=192, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 22774; Mature: 22774

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRFEEPLRSLIHQFKYHN
CHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
GLYLASFLKQLLLNALPKNALKPDCLIPVPMHPKRLKRRGFNQAGVLTRLLARQLNIPYD
CHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCHH
LYYCQKIINTASQANLDGEQRRKNLRHAFYVSAVTYEHVMIVDDLLTTGSTANEMAHTLK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NAGVKRVDICCCARAVTKN
HCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRFEEPLRSLIHQFKYHN
CHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
GLYLASFLKQLLLNALPKNALKPDCLIPVPMHPKRLKRRGFNQAGVLTRLLARQLNIPYD
CHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCHH
LYYCQKIINTASQANLDGEQRRKNLRHAFYVSAVTYEHVMIVDDLLTTGSTANEMAHTLK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NAGVKRVDICCCARAVTKN
HCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]