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The map label for this gene is ybeQ [H]

Identifier: 52842435

GI number: 52842435

Start: 2508818

End: 2509945

Strand: Reverse

Name: ybeQ [H]

Synonym: lpg2222

Alternate gene names: 52842435

Gene position: 2509945-2508818 (Counterclockwise)

Preceding gene: 52842436

Following gene: 52842434

Centisome position: 73.87

GC content: 40.78

Gene sequence:

>1128_bases
ATGGACATGAAAAAATATATTTTATCTCTTTCTCTACTGACGGTGATTAACTCTTCAGCTATCGCTACGACTCAGGAAGG
TGAGGAGGCCTATAACAAGGGGTATTACGAAAAAGCATTTATTTTGTTGTCTCCTGAAGCGGATAAAGGAGATGCCAAGG
CTCAATATTTGCTGGGTAAGATGTATTATAATGCCCAAGGTGTAACTTATAATCCGGAAAAAACAGAGCAATTATTACTT
GCCTCAGCGAATCAAGGCAATGTCGATGCCCAGGTATTGTTAGCCGGTTTCTATTGGTACCTTAATACACCAGAGGGCTA
TAAAAAGGCGTTCGAATGGTATCAGAAAGCAGCGGATCAAAATAATGCGGATGGTCAATATGGCTTGGGCTATATGTATG
ATACAGGAACTGGTGTACCTCAGAATTCCGATACAGCCATGGTATGGTATAAAAAAGCAGCAGAGCAAGGCAACTCTAAT
GCGGCTTTGGCTATTGGTTATAATTATGATACCGGTACAGGGGTGAAAAAGGATAAGACTCAAGCTCTCAACTGGTATGC
AAAAGCAGCTGACTTAGGTAATGCCAGCGCACAATATAATCTTGGTTTGATGTATGAGCAAGGGGATGGTGTTCCTAAAG
ATTATCAGAAAGCAGCAGAGTATTTCGAGAAAGCAGCGAATCAAGGTCATGCCAAATCGCAATTGGAGTTAGGTTATTTA
TATGATTCTGGAAAATTAGGTAAATCGGATCTGCAAAAGGCTGCTTTTTGGTATCAAAAAAGCGCAGATCTGGGGAATGC
CAATGCGCAATTTAATTTAGCTGATATGTATTTTTACGGTGATGGGGTCGGTAAAAGCCTTGAGCAATCCGTATACTGGA
TGCAAAAAGCAGCTGAGCAAGGGTATGGTAAGGCTCAAAATCAATTAGGTATCTATTACAGAGACGGTATTGGTGTTGCT
GCTGATCCTGTAAAAGCTTATGCTTGGTTTACAGCAGCCAAGAATAATGGCTTTGAAAAAGCGGCGAGCAATGCCAGTGA
TCTTGAGAAATCTATGAACCCAGAGGATCTGAGTAAGGCGAGAATTTTAGGACAACAATATACGGATAATTACAAGGCCA
AAAAATAA

Upstream 100 bases:

>100_bases
TGAAAGATATAAAAAAAACAAAATGAAAAGTAATTTTATACATTGCTGAATTTATGTCATATACTTTAAAGCGATAGCTC
TTAAAAATAAGGTATATATC

Downstream 100 bases:

>100_bases
ATGCCTGTTACCTGTTTTCAAGAGCTAGGGATACTGCATTTGTGGGCTATGGGAGTGTGCGAGAGAATTCTCGCATACAC
TCGGGTTCGGCAGCCCAAAA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MDMKKYILSLSLLTVINSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLL
ASANQGNVDAQVLLAGFYWYLNTPEGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSN
AALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQGHAKSQLELGYL
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQGYGKAQNQLGIYYRDGIGVA
ADPVKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKARILGQQYTDNYKAKK

Sequences:

>Translated_375_residues
MDMKKYILSLSLLTVINSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLL
ASANQGNVDAQVLLAGFYWYLNTPEGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSN
AALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQGHAKSQLELGYL
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQGYGKAQNQLGIYYRDGIGVA
ADPVKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKARILGQQYTDNYKAKK
>Mature_375_residues
MDMKKYILSLSLLTVINSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLL
ASANQGNVDAQVLLAGFYWYLNTPEGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSN
AALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQGHAKSQLELGYL
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQGYGKAQNQLGIYYRDGIGVA
ADPVKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKARILGQQYTDNYKAKK

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=291, Percent_Identity=31.6151202749141, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI151301150, Length=321, Percent_Identity=29.9065420560748, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI217330658, Length=180, Percent_Identity=32.2222222222222, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI217330656, Length=180, Percent_Identity=32.2222222222222, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI33620759, Length=237, Percent_Identity=28.6919831223629, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI154689719, Length=232, Percent_Identity=30.1724137931034, Blast_Score=77, Evalue=4e-14,
Organism=Escherichia coli, GI87081769, Length=259, Percent_Identity=39.3822393822394, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1786867, Length=123, Percent_Identity=35.7723577235772, Blast_Score=78, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17563256, Length=314, Percent_Identity=30.2547770700637, Blast_Score=108, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319998, Length=269, Percent_Identity=29.368029739777, Blast_Score=79, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6319410, Length=247, Percent_Identity=28.3400809716599, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21355295, Length=331, Percent_Identity=30.8157099697885, Blast_Score=116, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 41415; Mature: 41415

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMKKYILSLSLLTVINSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGK
CCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHH
MYYNAQGVTYNPEKTEQLLLASANQGNVDAQVLLAGFYWYLNTPEGYKKAFEWYQKAADQ
HEECCCCCEECCCHHHEEEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCC
NNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSNAALAIGYNYDTGTGVKKDKT
CCCCCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHCCCCCEEEEEEECCCCCCCCCCCHH
QALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQGHAKSQLELGYL
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQ
ECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
GYGKAQNQLGIYYRDGIGVAADPVKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKA
CCCCCCCCCEEEEECCCCCCCCCHHHEEEEEECCCCCHHHHHCCHHHHHHCCCHHHHHHH
RILGQQYTDNYKAKK
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MDMKKYILSLSLLTVINSSAIATTQEGEEAYNKGYYEKAFILLSPEADKGDAKAQYLLGK
CCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHH
MYYNAQGVTYNPEKTEQLLLASANQGNVDAQVLLAGFYWYLNTPEGYKKAFEWYQKAADQ
HEECCCCCEECCCHHHEEEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCC
NNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSNAALAIGYNYDTGTGVKKDKT
CCCCCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHCCCCCEEEEEEECCCCCCCCCCCHH
QALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKAAEYFEKAANQGHAKSQLELGYL
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
YDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVGKSLEQSVYWMQKAAEQ
ECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
GYGKAQNQLGIYYRDGIGVAADPVKAYAWFTAAKNNGFEKAASNASDLEKSMNPEDLSKA
CCCCCCCCCEEEEECCCCCCCCCHHHEEEEEECCCCCHHHHHCCHHHHHHCCCHHHHHHH
RILGQQYTDNYKAKK
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]