| Definition | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chromosome, complete genome. |
|---|---|
| Accession | NC_002942 |
| Length | 3,397,754 |
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The map label for this gene is traC
Identifier: 52842301
GI number: 52842301
Start: 2337314
End: 2339911
Strand: Reverse
Name: traC
Synonym: lpg2087
Alternate gene names: 52842301
Gene position: 2339911-2337314 (Counterclockwise)
Preceding gene: 52842302
Following gene: 52842300
Centisome position: 68.87
GC content: 39.41
Gene sequence:
>2598_bases GTGGATGCAGCAGTCACAATTGGCTTTAAAATAAGGGGAGCCATTATGTTGTCAACTATAAAAAAAGCGCGTCTTGCAGT TAAAAAAACAAGCACTATTTTAAGTCATGCAACAGGCTCGCTATTGGAAACATTGCGAGAAGAGCTTGGCATGACTGATG CGCATCATAAAAAGCAAATCGAAGCGCTGTTGGATACTTATTGCTTAGCACCTTATTTACCTGACGAGGTTTACGATTCA GAAGCTGATATTTATCCTTACAAACAGGCATCTCATATGATGTTTGAATGCTCGACACTGATTGGTGCCAGTGAAGAAAC AGTGACTATTCTCACCAGTATATTAACGGATATTTTGCCACCGGAAAGTTGTTTTCATGCTTTGTTTTGGGCATCGCCTA AAATTGGCCACATGATTGATGAAATGGAACATCAACGCAATCAAGGCAGTGAGGTTTTAAAAGCCCTGGCACACCGACGA GCTGAATTTTACCGCAAAGGGGTGTACAGCTCATTAACTAAAGAAAGCAATTTTGTCTTGCGTGATTTTCGTTTATTTTT ATGTATTTCAATTCCGCGCAAATCCATAGAAGACGATCGCTTGTTGCTTGGTAGTTTGCGCGAAGACATCAGCAACAATC TAAAGTCAGTCAATATTATTTGTAAAGAACTGTCTATTGAAGAAGTGATTAGCTTAAAGCGGGAGTGGCTCTTTCCAACC GACAGCTTGTATGAAGAAAAAACCAATTACGATACCAATACTGAAATTCGTTTTCAACTGACTGACATTGAAGCGAGTAT GCGGGTTAAATCCAATCAAATAGAGATTGAGCGAGAAGAAGATACGAGGGTGATTAAATGCTTGTCCGTTAGGCAATATC CTAAATCCCCTGTGCAATGGCAACTGGGTGATTTATTTGGAAAAATGTTTAATACCTCTTTGCAAATAAGTTGTCCCTTT CTTTTTAGTTTTGCAATACGAATTAAAGATAAAGACAAGGTGATGGCGGCATTAGATGCCAAGTATGCTGATGAAGGGCA AAATGCCAAACAACCTTTTATTGCCAAATGGGTCAAAAATTTTAACAAAAAATACGCAGAAATTGAGGAGTTAAGAGAGC GGCTCAGTGGCGATGATTCTTTGGTTGATTCCTATTATAACGTTTTATTGTTTACAACACCTGCCAATGTCCGTCGCGAT GTACGACGTGCCAAGGATGTATTTCGTGGTAACCAATTTGATTTACGCACGCCAACAGGTTTGCAGTTACAAACACTTCT AGCCTCCATGCCCTTTGCACCTGCTGAAGGTATGTTTGATGATTACAAATCATTTGGACGGGTAAGACCTTTAACCAGTT TTAATACGGTTAACTTATTACCTATCCAGGGGGAATGGAAAGGGGCAGGACGATTTGCTCAGGTCTATCCACAAAGACGA GGGCAATTTACCGCTATTTATTTTTTTGACAACGTAGTCAGAAACTATAATGTCGCTATTGTAGCTCCTCCTGGAAAAGG AAAATCCTTTTTAATGAATGACTACATTCAAAGTCTGTTATCCCAGGGGGGCTTTGTTTATATCATTGATGTGGGCGGTT CATACGCTAAATCTTGTGAGATGTTGAACGGACAGCTTATTGATTTTAATCATGACACTGAAATTAGCCTAAACCTCTTT TCTACAATTGATGCACAAGCCAAAAATGATACTGCATTTAAAGACGTTCACAATCAGCTAATACAACTTGTAGGTATGAT GGCAAGACCATCAGGTAACGTCAGTGATGAAGAACGAAGTCATATTGAGAAAGCCATTGAGGCGATGTGGCGACAACATC ACAATGCTACAACTATTACTCTTATTGCTCATCACTTAGAAAGTAGTAACGATCCTATTTCTCAAAATATTGGGCGCCTG TTGTATAGCTATACTAAAAACGGTCGTTATGGCAGTTATTTTGAACCGCCTTGTTCGCTCGATTTTAAAAGAAATTTAGT CATTTTAGAGTTGGGTGGTCTTGATGGAAATAAGGATTTGCAGCGCATTGTATTGAAAATCTTAATGTATCAAATCACCA ATGCGATGTATTACACGCCAAAGCACATTCCCAAAAGCTGCTTGATTGATGAATCCTACGAATTACTTTCAGACAATGGT ACGGGTGGCAGTGCTAACTTTGTTAACGAGGGCTATAGGCGTGCGCCTAAATACGGTGGTAATTTTATTACAGTGACTCA TGGCTTAGATGATTATGAAAACAATCCAACTGCCAAAATGTGTTACGACAACGCCTATTATAAAATCTTTTTAGGTGCCT CCAAAAGTACGATTGACACTTTAAAAACGAGTAATCAGTTGGATGCTTATGGCGAGCGTTTAATCCGAAGCCTTAAAATA ACTAATGAATACTCTGAGTTTTTAATGATGTGTGAAGAGAATTCAACAGTGCATCGTTTGATTGTCGATCCATTTTCACG CGTCTTAAACACTACACGTGGTCCTGAAGTCGAGGCCTTGAAACGATTAATGGCAACAGGTTTGCCATTGGCTGATGCCA TTTCCAAAGTTGCCCTGGAGGTGTATGGCTATGTTTAA
Upstream 100 bases:
>100_bases ATGGAGAAGGGGTGATGCCTCTTTGGATAGCACCTTATGAAGACACTGATGGCAATTATCATCAAGCCAATCGAGTGTAC AGCGTTGTTAAGGAAGGACA
Downstream 100 bases:
>100_bases GACAACTCAAGTATCTCTTTTGACCGCACTCATCACCAGTATCTTAGTTAATGGGATTTTTTTTAGTGCTTTGAGGCGGC CAGATATTGCAACCATTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 865; Mature: 865
Protein sequence:
>865_residues MDAAVTIGFKIRGAIMLSTIKKARLAVKKTSTILSHATGSLLETLREELGMTDAHHKKQIEALLDTYCLAPYLPDEVYDS EADIYPYKQASHMMFECSTLIGASEETVTILTSILTDILPPESCFHALFWASPKIGHMIDEMEHQRNQGSEVLKALAHRR AEFYRKGVYSSLTKESNFVLRDFRLFLCISIPRKSIEDDRLLLGSLREDISNNLKSVNIICKELSIEEVISLKREWLFPT DSLYEEKTNYDTNTEIRFQLTDIEASMRVKSNQIEIEREEDTRVIKCLSVRQYPKSPVQWQLGDLFGKMFNTSLQISCPF LFSFAIRIKDKDKVMAALDAKYADEGQNAKQPFIAKWVKNFNKKYAEIEELRERLSGDDSLVDSYYNVLLFTTPANVRRD VRRAKDVFRGNQFDLRTPTGLQLQTLLASMPFAPAEGMFDDYKSFGRVRPLTSFNTVNLLPIQGEWKGAGRFAQVYPQRR GQFTAIYFFDNVVRNYNVAIVAPPGKGKSFLMNDYIQSLLSQGGFVYIIDVGGSYAKSCEMLNGQLIDFNHDTEISLNLF STIDAQAKNDTAFKDVHNQLIQLVGMMARPSGNVSDEERSHIEKAIEAMWRQHHNATTITLIAHHLESSNDPISQNIGRL LYSYTKNGRYGSYFEPPCSLDFKRNLVILELGGLDGNKDLQRIVLKILMYQITNAMYYTPKHIPKSCLIDESYELLSDNG TGGSANFVNEGYRRAPKYGGNFITVTHGLDDYENNPTAKMCYDNAYYKIFLGASKSTIDTLKTSNQLDAYGERLIRSLKI TNEYSEFLMMCEENSTVHRLIVDPFSRVLNTTRGPEVEALKRLMATGLPLADAISKVALEVYGYV
Sequences:
>Translated_865_residues MDAAVTIGFKIRGAIMLSTIKKARLAVKKTSTILSHATGSLLETLREELGMTDAHHKKQIEALLDTYCLAPYLPDEVYDS EADIYPYKQASHMMFECSTLIGASEETVTILTSILTDILPPESCFHALFWASPKIGHMIDEMEHQRNQGSEVLKALAHRR AEFYRKGVYSSLTKESNFVLRDFRLFLCISIPRKSIEDDRLLLGSLREDISNNLKSVNIICKELSIEEVISLKREWLFPT DSLYEEKTNYDTNTEIRFQLTDIEASMRVKSNQIEIEREEDTRVIKCLSVRQYPKSPVQWQLGDLFGKMFNTSLQISCPF LFSFAIRIKDKDKVMAALDAKYADEGQNAKQPFIAKWVKNFNKKYAEIEELRERLSGDDSLVDSYYNVLLFTTPANVRRD VRRAKDVFRGNQFDLRTPTGLQLQTLLASMPFAPAEGMFDDYKSFGRVRPLTSFNTVNLLPIQGEWKGAGRFAQVYPQRR GQFTAIYFFDNVVRNYNVAIVAPPGKGKSFLMNDYIQSLLSQGGFVYIIDVGGSYAKSCEMLNGQLIDFNHDTEISLNLF STIDAQAKNDTAFKDVHNQLIQLVGMMARPSGNVSDEERSHIEKAIEAMWRQHHNATTITLIAHHLESSNDPISQNIGRL LYSYTKNGRYGSYFEPPCSLDFKRNLVILELGGLDGNKDLQRIVLKILMYQITNAMYYTPKHIPKSCLIDESYELLSDNG TGGSANFVNEGYRRAPKYGGNFITVTHGLDDYENNPTAKMCYDNAYYKIFLGASKSTIDTLKTSNQLDAYGERLIRSLKI TNEYSEFLMMCEENSTVHRLIVDPFSRVLNTTRGPEVEALKRLMATGLPLADAISKVALEVYGYV >Mature_865_residues MDAAVTIGFKIRGAIMLSTIKKARLAVKKTSTILSHATGSLLETLREELGMTDAHHKKQIEALLDTYCLAPYLPDEVYDS EADIYPYKQASHMMFECSTLIGASEETVTILTSILTDILPPESCFHALFWASPKIGHMIDEMEHQRNQGSEVLKALAHRR AEFYRKGVYSSLTKESNFVLRDFRLFLCISIPRKSIEDDRLLLGSLREDISNNLKSVNIICKELSIEEVISLKREWLFPT DSLYEEKTNYDTNTEIRFQLTDIEASMRVKSNQIEIEREEDTRVIKCLSVRQYPKSPVQWQLGDLFGKMFNTSLQISCPF LFSFAIRIKDKDKVMAALDAKYADEGQNAKQPFIAKWVKNFNKKYAEIEELRERLSGDDSLVDSYYNVLLFTTPANVRRD VRRAKDVFRGNQFDLRTPTGLQLQTLLASMPFAPAEGMFDDYKSFGRVRPLTSFNTVNLLPIQGEWKGAGRFAQVYPQRR GQFTAIYFFDNVVRNYNVAIVAPPGKGKSFLMNDYIQSLLSQGGFVYIIDVGGSYAKSCEMLNGQLIDFNHDTEISLNLF STIDAQAKNDTAFKDVHNQLIQLVGMMARPSGNVSDEERSHIEKAIEAMWRQHHNATTITLIAHHLESSNDPISQNIGRL LYSYTKNGRYGSYFEPPCSLDFKRNLVILELGGLDGNKDLQRIVLKILMYQITNAMYYTPKHIPKSCLIDESYELLSDNG TGGSANFVNEGYRRAPKYGGNFITVTHGLDDYENNPTAKMCYDNAYYKIFLGASKSTIDTLKTSNQLDAYGERLIRSLKI TNEYSEFLMMCEENSTVHRLIVDPFSRVLNTTRGPEVEALKRLMATGLPLADAISKVALEVYGYV
Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002789 - InterPro: IPR014117 [H]
Pfam domain/function: PF01935 DUF87 [H]
EC number: NA
Molecular weight: Translated: 98258; Mature: 98258
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDAAVTIGFKIRGAIMLSTIKKARLAVKKTSTILSHATGSLLETLREELGMTDAHHKKQI CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH EALLDTYCLAPYLPDEVYDSEADIYPYKQASHMMFECSTLIGASEETVTILTSILTDILP HHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC PESCFHALFWASPKIGHMIDEMEHQRNQGSEVLKALAHRRAEFYRKGVYSSLTKESNFVL CHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH RDFRLFLCISIPRKSIEDDRLLLGSLREDISNNLKSVNIICKELSIEEVISLKREWLFPT HHHEEHHEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCC DSLYEEKTNYDTNTEIRFQLTDIEASMRVKSNQIEIEREEDTRVIKCLSVRQYPKSPVQW HHHHHHHCCCCCCCEEEEEEECCCCHHEEECCCEEEEECCCHHHHHHHHHHCCCCCCCCC QLGDLFGKMFNTSLQISCPFLFSFAIRIKDKDKVMAALDAKYADEGQNAKQPFIAKWVKN HHHHHHHHHHCCCEEEECCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH FNKKYAEIEELRERLSGDDSLVDSYYNVLLFTTPANVRRDVRRAKDVFRGNQFDLRTPTG HHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCEECCCCCC LQLQTLLASMPFAPAEGMFDDYKSFGRVRPLTSFNTVNLLPIQGEWKGAGRFAQVYPQRR CHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCC GQFTAIYFFDNVVRNYNVAIVAPPGKGKSFLMNDYIQSLLSQGGFVYIIDVGGSYAKSCE CCEEEEEEEHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH MLNGQLIDFNHDTEISLNLFSTIDAQAKNDTAFKDVHNQLIQLVGMMARPSGNVSDEERS HHCCEEEECCCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH HIEKAIEAMWRQHHNATTITLIAHHLESSNDPISQNIGRLLYSYTKNGRYGSYFEPPCSL HHHHHHHHHHHHCCCCEEEEHEEHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC DFKRNLVILELGGLDGNKDLQRIVLKILMYQITNAMYYTPKHIPKSCLIDESYELLSDNG CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCEEECCCCCCHHHCCCCCHHHHCCCC TGGSANFVNEGYRRAPKYGGNFITVTHGLDDYENNPTAKMCYDNAYYKIFLGASKSTIDT CCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCHHHHH LKTSNQLDAYGERLIRSLKITNEYSEFLMMCEENSTVHRLIVDPFSRVLNTTRGPEVEAL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHH KRLMATGLPLADAISKVALEVYGYV HHHHHCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MDAAVTIGFKIRGAIMLSTIKKARLAVKKTSTILSHATGSLLETLREELGMTDAHHKKQI CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH EALLDTYCLAPYLPDEVYDSEADIYPYKQASHMMFECSTLIGASEETVTILTSILTDILP HHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC PESCFHALFWASPKIGHMIDEMEHQRNQGSEVLKALAHRRAEFYRKGVYSSLTKESNFVL CHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH RDFRLFLCISIPRKSIEDDRLLLGSLREDISNNLKSVNIICKELSIEEVISLKREWLFPT HHHEEHHEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCC DSLYEEKTNYDTNTEIRFQLTDIEASMRVKSNQIEIEREEDTRVIKCLSVRQYPKSPVQW HHHHHHHCCCCCCCEEEEEEECCCCHHEEECCCEEEEECCCHHHHHHHHHHCCCCCCCCC QLGDLFGKMFNTSLQISCPFLFSFAIRIKDKDKVMAALDAKYADEGQNAKQPFIAKWVKN HHHHHHHHHHCCCEEEECCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH FNKKYAEIEELRERLSGDDSLVDSYYNVLLFTTPANVRRDVRRAKDVFRGNQFDLRTPTG HHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCEECCCCCC LQLQTLLASMPFAPAEGMFDDYKSFGRVRPLTSFNTVNLLPIQGEWKGAGRFAQVYPQRR CHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCC GQFTAIYFFDNVVRNYNVAIVAPPGKGKSFLMNDYIQSLLSQGGFVYIIDVGGSYAKSCE CCEEEEEEEHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH MLNGQLIDFNHDTEISLNLFSTIDAQAKNDTAFKDVHNQLIQLVGMMARPSGNVSDEERS HHCCEEEECCCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH HIEKAIEAMWRQHHNATTITLIAHHLESSNDPISQNIGRLLYSYTKNGRYGSYFEPPCSL HHHHHHHHHHHHCCCCEEEEHEEHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC DFKRNLVILELGGLDGNKDLQRIVLKILMYQITNAMYYTPKHIPKSCLIDESYELLSDNG CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCEEECCCCCCHHHCCCCCHHHHCCCC TGGSANFVNEGYRRAPKYGGNFITVTHGLDDYENNPTAKMCYDNAYYKIFLGASKSTIDT CCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCHHHHH LKTSNQLDAYGERLIRSLKITNEYSEFLMMCEENSTVHRLIVDPFSRVLNTTRGPEVEAL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHH KRLMATGLPLADAISKVALEVYGYV HHHHHCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2265751; 7915817; 1355084 [H]