Click here to switch to the map view.

The map label for this gene is traH

Identifier: 52842294

GI number: 52842294

Start: 2330325

End: 2331710

Strand: Reverse

Name: traH

Synonym: lpg2080

Alternate gene names: 52842294

Gene position: 2331710-2330325 (Counterclockwise)

Preceding gene: 52842295

Following gene: 52842293

Centisome position: 68.63

GC content: 43.51

Gene sequence:

>1386_bases
ATGAAAAAAATTCTTCTGTCTTGTGGGTTAATCGGTGCACTTGGCATCGGACAAGTGTACAGCAAATCAATAGGTGAGGA
TTTAACTGGTTATTTTAAAGCTCTTAATATGGGCGCGAATGTAACAGAGCCGCATGCTTACCAAGCGCAGCGTGCTGGTT
TTTATACTGGCGGTAATTTATACGCTAGAAGCAGCGTACGTAATCTGCAAATCATGCGTTTGAGCTGGCCTAAAGTGTCC
GCAGGCTGTGGCGGCATAGATGCCACGTTAGGTGGGTTTTCTCACATCAAAGGTAAAGAATTTGTCGATTTTACCAAGAA
TATATTGAACAACTCACAAGGTCTTGCCTTCCAATTGGCCCTAGAGCAAGCAACTCCTCTTTTAGGTAATGTGGCAACCA
AATTACAAAACGTGGCTACCTGGGTGAACCAAACCAATATCAGCTCGTGCGCAACCGCGGAAAGTGCCGTACTGGGTTTA
GCCCCACGCACCCGTATTGCACAACAACATGCCTGCCAATCCATCGGTCAATCCAAAAATCTCTTTTCAGACTGGGCCGA
GGCACGACAAGGCTGTGGTAAAGGCTCCAGTAATTATGATTACGACAGAGTGATTAATGAAAACAGCAGCAATGAGCAGG
TAGTTGATAATACCAATGTGGCGTGGAATGCGTTAAAGAAAAACGGCTTATTTGCAGATGATATCGAATTAGCTCAACTC
ATGATGACCTTATCAGGCACCTTAATTCTGACTCGCGATGCAGAAGGGGTGCATGTCCAACGCCTGTCTTCCTTAGTAAG
TAATAACAATTTAATCAGCGCTCTTTTACGCGGTGGCGAGGTAAAAATCTATCAATGTGATGAAAAGGTCAAATGCTTAC
AACCCACCTTAACCAGTAAAAACATTGATATCAGTCATGGTCTTGAATCAAAAGTTCGTGATCTGATTTTGGATATGGCA
AGCAAGATTAAAGACAATGTGGAGCAAAGTGAGGCCGCTAAAGGATTAATTGAGTCCACACAATATCCGGTGATGAAAAT
GGTCAGCGTTCAAATGGCCTTTATGAAGGACAGTGCAGTGATTGACACTACACGTTACTCAGAAGCCATTGCCATCGATA
TTTTATTTCAATATTTGAATGAAAACCTGCAACTCGTTAAACAAGCAGCAGGAGCTCTGCAATATCCAGAAGCAATAATG
AAAGAGTTTCAAACTGATCTCACCCAGGCTCGTCGCGACTTGGTTCAAATGGAAGGTAGCGCGCATCAGCGAATGAGCAT
GGCGATGCAGATGATTCAAGAAACTCAAACCATCGAGCAAATGCTTGTAGGCGAATTTTCATCAGAGCTCACTCAGTCTT
TGAGTTGGGCTAATCAAATGAGGTGA

Upstream 100 bases:

>100_bases
GCCAAGTGGCGAGTCTTGTTACTGAAGGCACTATTGATGAAGGCGAACTAACCAATCGGTTACTAAAAATTAGCCAGATA
CATGACAAAGAGGTGCCTTT

Downstream 100 bases:

>100_bases
GTGAAATGGCTGTTACGATGCAAATTTATACGATTACCGGTGGTGAGTTACTTAAGGCGTTTTATAACGCCACCGCAGCT
ATGTTTCACTATGATGGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MKKILLSCGLIGALGIGQVYSKSIGEDLTGYFKALNMGANVTEPHAYQAQRAGFYTGGNLYARSSVRNLQIMRLSWPKVS
AGCGGIDATLGGFSHIKGKEFVDFTKNILNNSQGLAFQLALEQATPLLGNVATKLQNVATWVNQTNISSCATAESAVLGL
APRTRIAQQHACQSIGQSKNLFSDWAEARQGCGKGSSNYDYDRVINENSSNEQVVDNTNVAWNALKKNGLFADDIELAQL
MMTLSGTLILTRDAEGVHVQRLSSLVSNNNLISALLRGGEVKIYQCDEKVKCLQPTLTSKNIDISHGLESKVRDLILDMA
SKIKDNVEQSEAAKGLIESTQYPVMKMVSVQMAFMKDSAVIDTTRYSEAIAIDILFQYLNENLQLVKQAAGALQYPEAIM
KEFQTDLTQARRDLVQMEGSAHQRMSMAMQMIQETQTIEQMLVGEFSSELTQSLSWANQMR

Sequences:

>Translated_461_residues
MKKILLSCGLIGALGIGQVYSKSIGEDLTGYFKALNMGANVTEPHAYQAQRAGFYTGGNLYARSSVRNLQIMRLSWPKVS
AGCGGIDATLGGFSHIKGKEFVDFTKNILNNSQGLAFQLALEQATPLLGNVATKLQNVATWVNQTNISSCATAESAVLGL
APRTRIAQQHACQSIGQSKNLFSDWAEARQGCGKGSSNYDYDRVINENSSNEQVVDNTNVAWNALKKNGLFADDIELAQL
MMTLSGTLILTRDAEGVHVQRLSSLVSNNNLISALLRGGEVKIYQCDEKVKCLQPTLTSKNIDISHGLESKVRDLILDMA
SKIKDNVEQSEAAKGLIESTQYPVMKMVSVQMAFMKDSAVIDTTRYSEAIAIDILFQYLNENLQLVKQAAGALQYPEAIM
KEFQTDLTQARRDLVQMEGSAHQRMSMAMQMIQETQTIEQMLVGEFSSELTQSLSWANQMR
>Mature_461_residues
MKKILLSCGLIGALGIGQVYSKSIGEDLTGYFKALNMGANVTEPHAYQAQRAGFYTGGNLYARSSVRNLQIMRLSWPKVS
AGCGGIDATLGGFSHIKGKEFVDFTKNILNNSQGLAFQLALEQATPLLGNVATKLQNVATWVNQTNISSCATAESAVLGL
APRTRIAQQHACQSIGQSKNLFSDWAEARQGCGKGSSNYDYDRVINENSSNEQVVDNTNVAWNALKKNGLFADDIELAQL
MMTLSGTLILTRDAEGVHVQRLSSLVSNNNLISALLRGGEVKIYQCDEKVKCLQPTLTSKNIDISHGLESKVRDLILDMA
SKIKDNVEQSEAAKGLIESTQYPVMKMVSVQMAFMKDSAVIDTTRYSEAIAIDILFQYLNENLQLVKQAAGALQYPEAIM
KEFQTDLTQARRDLVQMEGSAHQRMSMAMQMIQETQTIEQMLVGEFSSELTQSLSWANQMR

Specific function: Involved in pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010927 [H]

Pfam domain/function: PF06122 TraH [H]

EC number: NA

Molecular weight: Translated: 50596; Mature: 50596

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILLSCGLIGALGIGQVYSKSIGEDLTGYFKALNMGANVTEPHAYQAQRAGFYTGGNL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCEECCCCE
YARSSVRNLQIMRLSWPKVSAGCGGIDATLGGFSHIKGKEFVDFTKNILNNSQGLAFQLA
EECCCCCCEEEEEEECCCCCCCCCCCHHHHCCHHHCCCCHHHHHHHHHHCCCCCCEEEEE
LEQATPLLGNVATKLQNVATWVNQTNISSCATAESAVLGLAPRTRIAQQHACQSIGQSKN
HHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
LFSDWAEARQGCGKGSSNYDYDRVINENSSNEQVVDNTNVAWNALKKNGLFADDIELAQL
HHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEECCCCHHHHHHHHCCCCCCHHHHHHH
MMTLSGTLILTRDAEGVHVQRLSSLVSNNNLISALLRGGEVKIYQCDEKVKCLQPTLTSK
HHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCHHHHHCCCCCCC
NIDISHGLESKVRDLILDMASKIKDNVEQSEAAKGLIESTQYPVMKMVSVQMAFMKDSAV
CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCE
IDTTRYSEAIAIDILFQYLNENLQLVKQAAGALQYPEAIMKEFQTDLTQARRDLVQMEGS
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
AHQRMSMAMQMIQETQTIEQMLVGEFSSELTQSLSWANQMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKILLSCGLIGALGIGQVYSKSIGEDLTGYFKALNMGANVTEPHAYQAQRAGFYTGGNL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCEECCCCE
YARSSVRNLQIMRLSWPKVSAGCGGIDATLGGFSHIKGKEFVDFTKNILNNSQGLAFQLA
EECCCCCCEEEEEEECCCCCCCCCCCHHHHCCHHHCCCCHHHHHHHHHHCCCCCCEEEEE
LEQATPLLGNVATKLQNVATWVNQTNISSCATAESAVLGLAPRTRIAQQHACQSIGQSKN
HHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
LFSDWAEARQGCGKGSSNYDYDRVINENSSNEQVVDNTNVAWNALKKNGLFADDIELAQL
HHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEECCCCHHHHHHHHCCCCCCHHHHHHH
MMTLSGTLILTRDAEGVHVQRLSSLVSNNNLISALLRGGEVKIYQCDEKVKCLQPTLTSK
HHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCHHHHHCCCCCCC
NIDISHGLESKVRDLILDMASKIKDNVEQSEAAKGLIESTQYPVMKMVSVQMAFMKDSAV
CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCE
IDTTRYSEAIAIDILFQYLNENLQLVKQAAGALQYPEAIMKEFQTDLTQARRDLVQMEGS
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
AHQRMSMAMQMIQETQTIEQMLVGEFSSELTQSLSWANQMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1348105; 7915817; 2656408 [H]