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The map label for this gene is intD

Identifier: 52842271

GI number: 52842271

Start: 2296937

End: 2297941

Strand: Reverse

Name: intD

Synonym: lpg2057

Alternate gene names: 52842271

Gene position: 2297941-2296937 (Counterclockwise)

Preceding gene: 52842272

Following gene: 52842267

Centisome position: 67.63

GC content: 39.5

Gene sequence:

>1005_bases
ATGGCACTCACGAAAAAAAATGGGTTTTGGTGGATCGACGTCACCTTCGGTGACAAGCGTATACGCAGAAGCACTAGGAC
TAAAGTAAAACAACAAGCGCAACAATTCCATGATAATTTTCTACAAGATCTATGGAGTAACAAGCATACCAAATTACCCC
AACAGAAATCGTGGGTAGATGCTGTTGTGCGATGGTTAGAGGAATCAGCGCATAAACGAAGTTTAGTTACGGATAAATTT
CATTTGGCCTTTCTGGACCCTTATCTTGGCCAGAAAACGTTAGATGAAATTAACGCCGAATTAATTGAATTTATTGCGCA
AGAAAAAGAGCGGACTAATGTTACTCCAACGACGGTCAACCGAATGTTGGAAATTATACGTGCTATTTTAAACAAAGCTC
ATAAGGAATGGCAGTGGATAAACACCATGCCATTATTCAGAATGAGAAAAGTTGAAAATAAACGTATACGTTGGTTGAGT
AGGGGACAGGCTAATAAATTGATTCAGGAGCTACCAAATCATTTGAAAGATATGGCAGCTTTTACTTTGGCAACTGGTTT
ACGCCAATCTAATGTTACTCAATTGCAGTGGAGTGAAGTGGATTTAATTAGAAAACATGCACTCATTCACCCTGATCAAT
CTAAAACAAAGAAGGCTATCCCTGTTCCTTTAAACTCTCAGGCAATTGTCATTATAGAAAAACAAGTGGGCTTACATCCC
ACATTTGTATTTACCTATTTTGGTAAGCCTGTTACGCGATGTAATAATCATGCTTGGCAAAAAGCGTTGATTCGGGCAGG
AATCAAAGATTTTCGCTGGCATGACTTGCGTCACACTTGGGCAAGTTGGCATGTGCAAAATGGTACCTCATTGCAAGAAT
TACAGCAATTAGGTGGATGGTCAGAATATGAAATGGTGTTACGTTACGCGCATCTTTCAAGTGACCATTTAAAGGTGGCA
GCGGAAAGAATTACAAAAAATTCTGGCACGTTTTCGTCACTGTAA

Upstream 100 bases:

>100_bases
GGCGAGGTTGGCGTTTTATAGAACAAGATCTTGCGATGTATATGCGAAACAAGTACTCTACTTGCGATGCATCGTGGGGT
GTCGATATAGGAGATAATAA

Downstream 100 bases:

>100_bases
CTTGGTTTTTACGGCACGTTTCGATCCAGGCAACCGTTAACTACCTGATTTTAAAGGGTTTAAATGGTGCGCTCGGAGGG
ACTCGAACCCCCGACACCTT

Product: prophage dlp12 integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MALTKKNGFWWIDVTFGDKRIRRSTRTKVKQQAQQFHDNFLQDLWSNKHTKLPQQKSWVDAVVRWLEESAHKRSLVTDKF
HLAFLDPYLGQKTLDEINAELIEFIAQEKERTNVTPTTVNRMLEIIRAILNKAHKEWQWINTMPLFRMRKVENKRIRWLS
RGQANKLIQELPNHLKDMAAFTLATGLRQSNVTQLQWSEVDLIRKHALIHPDQSKTKKAIPVPLNSQAIVIIEKQVGLHP
TFVFTYFGKPVTRCNNHAWQKALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGWSEYEMVLRYAHLSSDHLKVA
AERITKNSGTFSSL

Sequences:

>Translated_334_residues
MALTKKNGFWWIDVTFGDKRIRRSTRTKVKQQAQQFHDNFLQDLWSNKHTKLPQQKSWVDAVVRWLEESAHKRSLVTDKF
HLAFLDPYLGQKTLDEINAELIEFIAQEKERTNVTPTTVNRMLEIIRAILNKAHKEWQWINTMPLFRMRKVENKRIRWLS
RGQANKLIQELPNHLKDMAAFTLATGLRQSNVTQLQWSEVDLIRKHALIHPDQSKTKKAIPVPLNSQAIVIIEKQVGLHP
TFVFTYFGKPVTRCNNHAWQKALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGWSEYEMVLRYAHLSSDHLKVA
AERITKNSGTFSSL
>Mature_333_residues
ALTKKNGFWWIDVTFGDKRIRRSTRTKVKQQAQQFHDNFLQDLWSNKHTKLPQQKSWVDAVVRWLEESAHKRSLVTDKFH
LAFLDPYLGQKTLDEINAELIEFIAQEKERTNVTPTTVNRMLEIIRAILNKAHKEWQWINTMPLFRMRKVENKRIRWLSR
GQANKLIQELPNHLKDMAAFTLATGLRQSNVTQLQWSEVDLIRKHALIHPDQSKTKKAIPVPLNSQAIVIIEKQVGLHPT
FVFTYFGKPVTRCNNHAWQKALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGWSEYEMVLRYAHLSSDHLKVAA
ERITKNSGTFSSL

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=365, Percent_Identity=36.7123287671233, Blast_Score=232, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39182; Mature: 39050

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTKKNGFWWIDVTFGDKRIRRSTRTKVKQQAQQFHDNFLQDLWSNKHTKLPQQKSWVD
CCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
AVVRWLEESAHKRSLVTDKFHLAFLDPYLGQKTLDEINAELIEFIAQEKERTNVTPTTVN
HHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RMLEIIRAILNKAHKEWQWINTMPLFRMRKVENKRIRWLSRGQANKLIQELPNHLKDMAA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FTLATGLRQSNVTQLQWSEVDLIRKHALIHPDQSKTKKAIPVPLNSQAIVIIEKQVGLHP
HHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEEEEECCCCCCC
TFVFTYFGKPVTRCNNHAWQKALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGW
EEEEEECCCHHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCC
SEYEMVLRYAHLSSDHLKVAAERITKNSGTFSSL
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ALTKKNGFWWIDVTFGDKRIRRSTRTKVKQQAQQFHDNFLQDLWSNKHTKLPQQKSWVD
CCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
AVVRWLEESAHKRSLVTDKFHLAFLDPYLGQKTLDEINAELIEFIAQEKERTNVTPTTVN
HHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RMLEIIRAILNKAHKEWQWINTMPLFRMRKVENKRIRWLSRGQANKLIQELPNHLKDMAA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FTLATGLRQSNVTQLQWSEVDLIRKHALIHPDQSKTKKAIPVPLNSQAIVIIEKQVGLHP
HHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEEEEECCCCCCC
TFVFTYFGKPVTRCNNHAWQKALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGW
EEEEEECCCHHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCC
SEYEMVLRYAHLSSDHLKVAAERITKNSGTFSSL
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]