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The map label for this gene is 52842224

Identifier: 52842224

GI number: 52842224

Start: 2246958

End: 2247449

Strand: Reverse

Name: 52842224

Synonym: lpg2007

Alternate gene names: NA

Gene position: 2247449-2246958 (Counterclockwise)

Preceding gene: 52842225

Following gene: 52842223

Centisome position: 66.15

GC content: 36.59

Gene sequence:

>492_bases
ATGAGTGATGATCAATACGCTCGCACAGGGCGTCTGATGTTCTTATTTGTTTGGATTATATTTTTTATAGGGTTGTTTTT
ATTCTTTTACTATTACGATAAGCCAGAAAGTACCATTTTTGTAGCTAGTCGTACCGAGTATGTATTAAGCGCTGATAATG
AAGGACATTATTGGATAAAAGGTAAGATTAATGAATATCCTGTAGAGTTTTTAGTGGATACTGGCGCTACTTTGGTAGCA
ATACCGCAAGGCCTGGCTAAGGATTTAAAAATTACCGGGCGATATCCTGTTACCATAGAAACCGCCAATGGCAAGGTAAC
TGGATTTTTAACTCGTTTGCAACATTTGTCATTTGGAGAGTTTCACTTACAGAATGTCAAAGCGGTCATAATCCCGCAAA
ATGATGATAATACGGTGTTATTAGGAATGAATGTCCTATCACAATTTCATATGATTCAGCAGGGCAAACAATTGATATTA
AAAAGACAGTGA

Upstream 100 bases:

>100_bases
AGCCTTATCCTGCAAGAGCGGCAATCGAAGTCTCCGCATTACCAAAGGGTGCCAAGGTTGAAATGGATGGGATTCTGGTT
TTGTCTGAATCCGCATAATC

Downstream 100 bases:

>100_bases
ACTGACTGTATGTTTTCAATAAAATGAGATCAAACAGATTTATTTAAATAGAGAGTTTTGATGAGTATAGTTTCCCTTAA
CGGTGCCTCTTTAATCTTGG

Product: aspartyl protease

Products: NA

Alternate protein names: Aspartyl Protease-Like Protein; Peptidase A2A; Retroviral Aspartyl Protease Domain Protein; Peptidase Aspartic Family; Peptidase; Retroviral Aspartyl Protease Domain-Containing Protein; Signal Peptide; Aspartic Protease

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSDDQYARTGRLMFLFVWIIFFIGLFLFFYYYDKPESTIFVASRTEYVLSADNEGHYWIKGKINEYPVEFLVDTGATLVA
IPQGLAKDLKITGRYPVTIETANGKVTGFLTRLQHLSFGEFHLQNVKAVIIPQNDDNTVLLGMNVLSQFHMIQQGKQLIL
KRQ

Sequences:

>Translated_163_residues
MSDDQYARTGRLMFLFVWIIFFIGLFLFFYYYDKPESTIFVASRTEYVLSADNEGHYWIKGKINEYPVEFLVDTGATLVA
IPQGLAKDLKITGRYPVTIETANGKVTGFLTRLQHLSFGEFHLQNVKAVIIPQNDDNTVLLGMNVLSQFHMIQQGKQLIL
KRQ
>Mature_162_residues
SDDQYARTGRLMFLFVWIIFFIGLFLFFYYYDKPESTIFVASRTEYVLSADNEGHYWIKGKINEYPVEFLVDTGATLVAI
PQGLAKDLKITGRYPVTIETANGKVTGFLTRLQHLSFGEFHLQNVKAVIIPQNDDNTVLLGMNVLSQFHMIQQGKQLILK
RQ

Specific function: Unknown

COG id: COG3577

COG function: function code R; Predicted aspartyl protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18749; Mature: 18618

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDQYARTGRLMFLFVWIIFFIGLFLFFYYYDKPESTIFVASRTEYVLSADNEGHYWIK
CCCCCHHHHCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCEEEEECCCCCEEEEE
GKINEYPVEFLVDTGATLVAIPQGLAKDLKITGRYPVTIETANGKVTGFLTRLQHLSFGE
CCCCCCCEEEEEECCCEEEEECCCCCCCEEECCCCCEEEECCCCEEHHHHHHHHHCCCCC
FHLQNVKAVIIPQNDDNTVLLGMNVLSQFHMIQQGKQLILKRQ
EEECCEEEEEEECCCCCEEEEEHHHHHHHHHHHHCHHEEEECC
>Mature Secondary Structure 
SDDQYARTGRLMFLFVWIIFFIGLFLFFYYYDKPESTIFVASRTEYVLSADNEGHYWIK
CCCCHHHHCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCEEEEECCCCCEEEEE
GKINEYPVEFLVDTGATLVAIPQGLAKDLKITGRYPVTIETANGKVTGFLTRLQHLSFGE
CCCCCCCEEEEEECCCEEEEECCCCCCCEEECCCCCEEEECCCCEEHHHHHHHHHCCCCC
FHLQNVKAVIIPQNDDNTVLLGMNVLSQFHMIQQGKQLILKRQ
EEECCEEEEEEECCCCCEEEEEHHHHHHHHHHHHCHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA