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The map label for this gene is indA

Identifier: 52842146

GI number: 52842146

Start: 2153489

End: 2154415

Strand: Direct

Name: indA

Synonym: lpg1928

Alternate gene names: 52842146

Gene position: 2153489-2154415 (Clockwise)

Preceding gene: 52842145

Following gene: 52842147

Centisome position: 63.38

GC content: 41.1

Gene sequence:

>927_bases
ATGTTTCATGACTTGTTGGAATTTAACGAAGAAGTACTGGATGCTATCAATGATAAAAACCCAATTGTTGCTCTTGAGTC
GACCATTATCTCTCATGGAATGCCCTACCCTGATAATTTAACTACGGCAATAGAGGTTGAAAATATTATTCGTAGACAAG
GCGCCATTCCAGCTACTATAGCGATGCACCAAGGGAAAATCCGTGTTGGTTTAACTCAAGAAGTTATGGAACATCTCGCG
CTTCAAAAAGAAGTAATAAAAGCCTCTCGCAGAGACATTTCTTTTGTATTATCTCGTAAAGTGACTGCCAGCACGACGGT
AGCAGCAACCATGTTTTGTGCCCATATGGCTAAGCTCCCCCTATTTGTCACCGGAGGTATAGGTGGTGTTCATCAAGACG
TGACGATGAGTTTTGATATTTCAGCTGATCTTATAGAGCTATCCAATACGCCAGTTACCGTAGTCTGTTCTGGCGCAAAA
TCGATTCTCGACTTACCAAAAACATTGGAAGTTCTTGAAACGTTTGGGGTGCCGGTCATAGGTTATGCCACAGACGAATT
CCCTGCTTTTTATAGCAGATCGAGTGGAATACCAGTTCCACAACGCTTAAACTCGGCCGAGGAAGTAGCAAATCTCATGT
CAATTCAACAGAAATTGAATATGAAAAATGGAATAGTCGTCGCAAACCCCATTCCAGTATCAGCCGAACTATCCGATGAG
GAAATCAGTCCATACATAAAACAGGCTCATGATGAAGCCAAACACATGAGCGGAAAATCATTAACCCCCTTCCTGTTAAA
ACGTATTGCTGAATTAACTGCGGGCAAGAGCCTGGAAGCTAATATTGAGCTTATCAAAAACAACGCTTTTCTAGGAGCAG
AAATTGCCATAGCCTACCAAAAAAAATTATTTTCAAAAAAAACTTAA

Upstream 100 bases:

>100_bases
GGGCTCGTGAGTTTTTGAAAGAAGAAATGCAAAAATATTTTTTTGGCGAAGGTTCAGAAAAACCCTCTGGCTATAAAGAA
ATAAAATAAAGGATTAATTT

Downstream 100 bases:

>100_bases
TCAACACTTGACTCAAAGTCGATCTCGGAGTTTAATAGCAAGCCTTGAGTGGCCAGATAGCTCAGTCGGTAGAGCAGAGG
ACTGAAAATCCTCGTGTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: PsiMP glycosidase

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MFHDLLEFNEEVLDAINDKNPIVALESTIISHGMPYPDNLTTAIEVENIIRRQGAIPATIAMHQGKIRVGLTQEVMEHLA
LQKEVIKASRRDISFVLSRKVTASTTVAATMFCAHMAKLPLFVTGGIGGVHQDVTMSFDISADLIELSNTPVTVVCSGAK
SILDLPKTLEVLETFGVPVIGYATDEFPAFYSRSSGIPVPQRLNSAEEVANLMSIQQKLNMKNGIVVANPIPVSAELSDE
EISPYIKQAHDEAKHMSGKSLTPFLLKRIAELTAGKSLEANIELIKNNAFLGAEIAIAYQKKLFSKKT

Sequences:

>Translated_308_residues
MFHDLLEFNEEVLDAINDKNPIVALESTIISHGMPYPDNLTTAIEVENIIRRQGAIPATIAMHQGKIRVGLTQEVMEHLA
LQKEVIKASRRDISFVLSRKVTASTTVAATMFCAHMAKLPLFVTGGIGGVHQDVTMSFDISADLIELSNTPVTVVCSGAK
SILDLPKTLEVLETFGVPVIGYATDEFPAFYSRSSGIPVPQRLNSAEEVANLMSIQQKLNMKNGIVVANPIPVSAELSDE
EISPYIKQAHDEAKHMSGKSLTPFLLKRIAELTAGKSLEANIELIKNNAFLGAEIAIAYQKKLFSKKT
>Mature_308_residues
MFHDLLEFNEEVLDAINDKNPIVALESTIISHGMPYPDNLTTAIEVENIIRRQGAIPATIAMHQGKIRVGLTQEVMEHLA
LQKEVIKASRRDISFVLSRKVTASTTVAATMFCAHMAKLPLFVTGGIGGVHQDVTMSFDISADLIELSNTPVTVVCSGAK
SILDLPKTLEVLETFGVPVIGYATDEFPAFYSRSSGIPVPQRLNSAEEVANLMSIQQKLNMKNGIVVANPIPVSAELSDE
EISPYIKQAHDEAKHMSGKSLTPFLLKRIAELTAGKSLEANIELIKNNAFLGAEIAIAYQKKLFSKKT

Specific function: Catalyzes the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil

COG id: COG2313

COG function: function code Q; Uncharacterized enzyme involved in pigment biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine-5'-phosphate glycosidase family

Homologues:

Organism=Escherichia coli, GI1788490, Length=301, Percent_Identity=53.8205980066445, Blast_Score=309, Evalue=2e-85,
Organism=Caenorhabditis elegans, GI25147470, Length=298, Percent_Identity=45.3020134228188, Blast_Score=251, Evalue=3e-67,
Organism=Drosophila melanogaster, GI24580669, Length=300, Percent_Identity=51, Blast_Score=287, Evalue=6e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSUG_LEGPH (Q5ZU79)

Other databases:

- EMBL:   AE017354
- RefSeq:   YP_095945.1
- ProteinModelPortal:   Q5ZU79
- SMR:   Q5ZU79
- STRING:   Q5ZU79
- GeneID:   3078141
- GenomeReviews:   AE017354_GR
- KEGG:   lpn:lpg1928
- NMPDR:   fig|272624.3.peg.757
- eggNOG:   COG2313
- HOGENOM:   HBG308892
- OMA:   PATIAVM
- ProtClustDB:   CLSK862888
- BioCyc:   LPNE272624:LPG1928-MONOMER
- HAMAP:   MF_01876
- InterPro:   IPR022830
- InterPro:   IPR007342
- PANTHER:   PTHR10584:SF1

Pfam domain/function: PF04227 Indigoidine_A; SSF110581 Indigdn_synthA

EC number: NA

Molecular weight: Translated: 33570; Mature: 33570

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHDLLEFNEEVLDAINDKNPIVALESTIISHGMPYPDNLTTAIEVENIIRRQGAIPATI
CCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
AMHQGKIRVGLTQEVMEHLALQKEVIKASRRDISFVLSRKVTASTTVAATMFCAHMAKLP
EEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
LFVTGGIGGVHQDVTMSFDISADLIELSNTPVTVVCSGAKSILDLPKTLEVLETFGVPVI
EEEECCCCCCCCCEEEEEECCCHHEEECCCCEEEEECCCHHHHCCHHHHHHHHHHCCCEE
GYATDEFPAFYSRSSGIPVPQRLNSAEEVANLMSIQQKLNMKNGIVVANPIPVSAELSDE
EECCCCCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHH
EISPYIKQAHDEAKHMSGKSLTPFLLKRIAELTAGKSLEANIELIKNNAFLGAEIAIAYQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEECHHHHHHHH
KKLFSKKT
HHHHHCCC
>Mature Secondary Structure
MFHDLLEFNEEVLDAINDKNPIVALESTIISHGMPYPDNLTTAIEVENIIRRQGAIPATI
CCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
AMHQGKIRVGLTQEVMEHLALQKEVIKASRRDISFVLSRKVTASTTVAATMFCAHMAKLP
EEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
LFVTGGIGGVHQDVTMSFDISADLIELSNTPVTVVCSGAKSILDLPKTLEVLETFGVPVI
EEEECCCCCCCCCEEEEEECCCHHEEECCCCEEEEECCCHHHHCCHHHHHHHHHHCCCEE
GYATDEFPAFYSRSSGIPVPQRLNSAEEVANLMSIQQKLNMKNGIVVANPIPVSAELSDE
EECCCCCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHH
EISPYIKQAHDEAKHMSGKSLTPFLLKRIAELTAGKSLEANIELIKNNAFLGAEIAIAYQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEECHHHHHHHH
KKLFSKKT
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA