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The map label for this gene is ynfJ [C]

Identifier: 52842112

GI number: 52842112

Start: 2112309

End: 2113622

Strand: Direct

Name: ynfJ [C]

Synonym: lpg1894

Alternate gene names: 52842112

Gene position: 2112309-2113622 (Clockwise)

Preceding gene: 52842110

Following gene: 52842113

Centisome position: 62.17

GC content: 41.93

Gene sequence:

>1314_bases
TTGATGACAAGTTACCTTAAAGGAATCCAGGGAATGGAGTTAACCACAACCGAGAACCAAGTATTTAAAAGTTCCAAAGT
AAGTCTTGCTCTGGTTACTGTTCTGGTGGGAATCGGTTCAGGTTTTCTAGGCATGTGCCTGGCCATGTTATTGCATTATC
TTCAACATATTGCCTATGGTTACAGCCCCCTTCACATCATCAGTAATGAAACTTTTCTGGAGGGAGTTAGAGCCTCTTCA
TCTGAGCGGAGAATAAGCATACTATTCCTTTGTGGCTTAATCGCAGGCATGGGATGGTGGGCACTTTATCGTTTTGGTAA
ACCATTAGTCAGTATTGCGGCGGCAATAAAATCGGGTAAACCCATGCCAGCTCTCAGTACATTCATTCATGCTTTTTTAC
AAATCATAACAATTGCATTGGGCTCACCTCTGGGACGAGAGGTGGCTCCTCGTGAGGTAAGCTCTGTCTTTGCTTACTGG
CTATCTAGCAAAGCGGGATTAACTCCTGAGGAAAGCAAGATGATGTTGGCATGTGGAGCAGGCGCGGGGCTTGCTGCGGT
TTATAATGTGCCTTTAGGCGGTGCCGTTTTTGTTTTGGAAGTGTTGTTATGCACTTCCAACTGGACTGTCTTGCTTCCTG
CATTATCTTCTTCTGCTATAGCAGTTCTAGTGTCTTGGTGGGGTTTGGGAAATGAATCAATTTATCAACTCCCTGAATTT
TCATTAAGTGCACCTATAATTCTTTGGTCTATTCTTGCCAGCCCGGTGTTAGGTTTTTTTGCTTTTTGGTTTATTCAAAT
TGCTACAATACAACGCAGCAAAGCAATGCATAACTGGCAAATGATATTGGCTTGTTTAATTAATTTTTTAATCATTGGCT
TATTCGCAATTTATTTTCCTTCTTTACTAGGTAACGGCAAAAGTCCGGCAGAAATGGAGTTTGATCAATCAGTAGGAATT
GGTTTAAGTATTGTATTATTTATGTTGAGGAATGTATTCGTATGGTCAAGCTTGCGTGTAGGAGCACAAGGTGGCTTACT
AACCCCCTCACTGGCTAACGGCGCCTTATTAGGAGCTATTCTAGGTGGAATTTGGAATTTGTATTTACCACCCGCTCCCA
TCCATGCCTTCGCGCTTATTGGTGCCACGGCTTTTCTTGCTGCGGCACAAAAAATGCCTTTGACTGCCATTATCCTCATT
TTCGAATTCACCCGGATTAATTTTATCTTTCTTATCCCTATCATGCTTGCTGTTTCCGGCTCTATGGGTATGTGCCAGTT
AACCAAGAACTATTATATTAAATATAAAGTATGA

Upstream 100 bases:

>100_bases
CTTTTTTAAATTTTGTTATTACGGGTACATTTATTAATCTGTTTCACTTGCAAAAAAATCTGCATACAGAAATAATAAAA
TTCTTACCCCTATAAGCAAA

Downstream 100 bases:

>100_bases
TCGTTTGTAATTAGCCAGAATTTGCCCAATATATAACCATATTGATCAATATAAATTCTTTGGATGCTATACTTATAATG
TAGACCTGATGAAAAGGAAG

Product: chloride channel protein (voltage gated)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MMTSYLKGIQGMELTTTENQVFKSSKVSLALVTVLVGIGSGFLGMCLAMLLHYLQHIAYGYSPLHIISNETFLEGVRASS
SERRISILFLCGLIAGMGWWALYRFGKPLVSIAAAIKSGKPMPALSTFIHAFLQIITIALGSPLGREVAPREVSSVFAYW
LSSKAGLTPEESKMMLACGAGAGLAAVYNVPLGGAVFVLEVLLCTSNWTVLLPALSSSAIAVLVSWWGLGNESIYQLPEF
SLSAPIILWSILASPVLGFFAFWFIQIATIQRSKAMHNWQMILACLINFLIIGLFAIYFPSLLGNGKSPAEMEFDQSVGI
GLSIVLFMLRNVFVWSSLRVGAQGGLLTPSLANGALLGAILGGIWNLYLPPAPIHAFALIGATAFLAAAQKMPLTAIILI
FEFTRINFIFLIPIMLAVSGSMGMCQLTKNYYIKYKV

Sequences:

>Translated_437_residues
MMTSYLKGIQGMELTTTENQVFKSSKVSLALVTVLVGIGSGFLGMCLAMLLHYLQHIAYGYSPLHIISNETFLEGVRASS
SERRISILFLCGLIAGMGWWALYRFGKPLVSIAAAIKSGKPMPALSTFIHAFLQIITIALGSPLGREVAPREVSSVFAYW
LSSKAGLTPEESKMMLACGAGAGLAAVYNVPLGGAVFVLEVLLCTSNWTVLLPALSSSAIAVLVSWWGLGNESIYQLPEF
SLSAPIILWSILASPVLGFFAFWFIQIATIQRSKAMHNWQMILACLINFLIIGLFAIYFPSLLGNGKSPAEMEFDQSVGI
GLSIVLFMLRNVFVWSSLRVGAQGGLLTPSLANGALLGAILGGIWNLYLPPAPIHAFALIGATAFLAAAQKMPLTAIILI
FEFTRINFIFLIPIMLAVSGSMGMCQLTKNYYIKYKV
>Mature_437_residues
MMTSYLKGIQGMELTTTENQVFKSSKVSLALVTVLVGIGSGFLGMCLAMLLHYLQHIAYGYSPLHIISNETFLEGVRASS
SERRISILFLCGLIAGMGWWALYRFGKPLVSIAAAIKSGKPMPALSTFIHAFLQIITIALGSPLGREVAPREVSSVFAYW
LSSKAGLTPEESKMMLACGAGAGLAAVYNVPLGGAVFVLEVLLCTSNWTVLLPALSSSAIAVLVSWWGLGNESIYQLPEF
SLSAPIILWSILASPVLGFFAFWFIQIATIQRSKAMHNWQMILACLINFLIIGLFAIYFPSLLGNGKSPAEMEFDQSVGI
GLSIVLFMLRNVFVWSSLRVGAQGGLLTPSLANGALLGAILGGIWNLYLPPAPIHAFALIGATAFLAAAQKMPLTAIILI
FEFTRINFIFLIPIMLAVSGSMGMCQLTKNYYIKYKV

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 47214; Mature: 47214

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTSYLKGIQGMELTTTENQVFKSSKVSLALVTVLVGIGSGFLGMCLAMLLHYLQHIAYG
CCCHHHCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
YSPLHIISNETFLEGVRASSSERRISILFLCGLIAGMGWWALYRFGKPLVSIAAAIKSGK
CCCEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
PMPALSTFIHAFLQIITIALGSPLGREVAPREVSSVFAYWLSSKAGLTPEESKMMLACGA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
GAGLAAVYNVPLGGAVFVLEVLLCTSNWTVLLPALSSSAIAVLVSWWGLGNESIYQLPEF
CCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHCCCCC
SLSAPIILWSILASPVLGFFAFWFIQIATIQRSKAMHNWQMILACLINFLIIGLFAIYFP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLGNGKSPAEMEFDQSVGIGLSIVLFMLRNVFVWSSLRVGAQGGLLTPSLANGALLGAI
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
LGGIWNLYLPPAPIHAFALIGATAFLAAAQKMPLTAIILIFEFTRINFIFLIPIMLAVSG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SMGMCQLTKNYYIKYKV
CCCEEEECCCEEEEEEC
>Mature Secondary Structure
MMTSYLKGIQGMELTTTENQVFKSSKVSLALVTVLVGIGSGFLGMCLAMLLHYLQHIAYG
CCCHHHCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
YSPLHIISNETFLEGVRASSSERRISILFLCGLIAGMGWWALYRFGKPLVSIAAAIKSGK
CCCEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
PMPALSTFIHAFLQIITIALGSPLGREVAPREVSSVFAYWLSSKAGLTPEESKMMLACGA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
GAGLAAVYNVPLGGAVFVLEVLLCTSNWTVLLPALSSSAIAVLVSWWGLGNESIYQLPEF
CCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHCCCCC
SLSAPIILWSILASPVLGFFAFWFIQIATIQRSKAMHNWQMILACLINFLIIGLFAIYFP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLGNGKSPAEMEFDQSVGIGLSIVLFMLRNVFVWSSLRVGAQGGLLTPSLANGALLGAI
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
LGGIWNLYLPPAPIHAFALIGATAFLAAAQKMPLTAIILIFEFTRINFIFLIPIMLAVSG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SMGMCQLTKNYYIKYKV
CCCEEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]