| Definition | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chromosome, complete genome. |
|---|---|
| Accession | NC_002942 |
| Length | 3,397,754 |
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The map label for this gene is glyS
Identifier: 52842066
GI number: 52842066
Start: 2059526
End: 2061592
Strand: Reverse
Name: glyS
Synonym: lpg1839
Alternate gene names: 52842066
Gene position: 2061592-2059526 (Counterclockwise)
Preceding gene: 52842067
Following gene: 52842065
Centisome position: 60.68
GC content: 40.45
Gene sequence:
>2067_bases ATGGTCAATGATTTTATTTTTGAATTAGGATGTGAAGAGCTGCCTTCTGGTGCTGTTTGGCCTTTGGCAAATGAGTTTTC TACTCGATTGTTAGCCGCATTAGATAAGGCGCAATTAAGTTATGGTGAAGTCAAGAGATTTGCTACACCAAGACGCCTGG CTATTGTGATTCATGACTTACAAACTGAACAGGAAAGCCAAAAAGTCATGCGACGCGGTCCTGCTGCAATAGCAGCATAC GATAGTGAAGGTAACCCGACCCCTGCTTTGTTAGGATTTGCAAAATCATGTAGTGTTACGGTAGATGCGCTCACCAAGAT TCAAACTGACAAAGGTGAATGGATTGTTTTTGAAACTCAGAGTGAGGGTACTAAAACAAAAGATCTCTTGCCTGGATTGG TTAGTCAATCTTTAGAGTCTTTACCTATCGCAAAACCCATGAGATGGGGAGAAGGAGACGACGAATTTGCCCGACCTGTC CATTGGGCCGTGATGCTTTATGGAAGTGAGACACTCAATCATAAAATTTTAGGCGTTACAAGTGGGTGTCATAGCAGGGG ACATCGTTTTCATCATCCTCAGGAAATAAGAATAAATTCAGCTGCAAGCTATGAAGATCAGATGAAAAATGCTTTTGTAA TTGCCGATTTTGCTACTAGGCGACAAGCCATTATCCATCAGGTACAAGAATTAGCAGCACCTCTAGGTGCTTCAGTGATT ATGCCTGAAGAATTGGTTGATGAAGTCACCTCAATAGTCGAATGGCCTCAAGCGCTCATTGCAAATTTTGAACAGGAGTT TTTAGAGGTTCCTGCTGAAGCCCTTATTGCTTCCATGCAATCTCATCAGAAGTGTTTTGCACTAAAAAATATGCATGGTG AGCTGCTACCTTATTTTATTACGGTATCAAATATCGCCAGTTCCAATCCAAAACAAGTAGTTTTAGGAAATGAGAAGGTA ATGAGGGCAAGATTAAGTGATGCTGCCTTTTTCTTTAAACAAGATAAGAAACAGCCGCTAAGCGCGCATATACCTTCTAC GGAGCAGGTTATTTTTCAAGTAAAGCTGGGAAGCATGTATGATAAGGTACAACGAATAAAGGCAATGATGGATCATTTAA GCCAGTCTCTCAATTTACCCTCTCACCTGGCTGAGCGAGCTACATTATTAAGCAAGTGTGATTTGATGACAGGTATGGTA GGCGAGTTTCCTGAATTGCAAGGGATTATGGGATATTATTATGCTCTTAATGATGGCGAAGAAGCTATTGTTGCTACCGC TTTAAATGAGCAATACATGCCTAGATTTTCTGGTGATAATTTACCATCCACTGATTTGGGCAAGGCACTTTCCCTGGCGG ATCGTATGGATACTCTGGTGGGTATTTTTGCGATTGGCCAAAAGCCAACTGGAGTAAAAGATCCTTTTAAATTAAGACGC CACGCTTTGTCTGTAGTCCGTTTACTCATTTCAATATCAGCACCGCTTAATTTATCAACTTTGATTAAAGAAGCCTTGGC TAATTATGGTGATCGACTCCCTCAAGACAAGAATTTAGTGGCTGAATTAAAACCATTTATTCTTGAGAGACTTCAATCTT ATTATCAAAATCAAGGTATCAGCGCTGATTTGGTTCATGCTGTCCGTGCTCGTCAGGATGATTGGTTATATGATTTAGAT AAGCGTCTATTCGCTTTAAAGTCATTTATCACTATGCCAGAGGCGACATCATTATCAGCTGCTTGTAAGCGTGTTGGCAA TATCTTAGCTCAGGCAGCATATGCGGATAAAAAAGTAGATATTAAGGAAGAGCTTATAGAGGAAGGCGCTGAAAAAGCAT TATTTGATCATCTTAATAAAATTACTAAAACAGTAGAAACTTTATACATTGCCGGAGATTATCAAGCATTACTTAAGCTT CTGGCCAGTCTTAAAGAGCCAGTAGACGCTTTTTTTGATCATGTGATGGTTATGGTTGAAGAGGAGTCATTGAAACAGAA CAGGCTTGCGCACCTGCAGCGATTACAAGAGTTATTGCAGGGTGTAGCTGACATTTCAATGTTGTAG
Upstream 100 bases:
>100_bases CAAAGGTATATATTACGTGTAAGACATCTATCAAGAGCAGTAGCTCAAGCTTACTATCAAGCGCGCGAGGCGTTAGGTTT CCCTATGCAAAAGGTGTGTA
Downstream 100 bases:
>100_bases CACTTATGAATCGAATTATATTGCTTGATAGAGATGGAGTAATTAACACTGACTCAATCAATTATATCAAGAATGTTGAT GAGCTTATTATTATACCCGA
Product: glycyl tRNA synthetase, beta subunit
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 688; Mature: 688
Protein sequence:
>688_residues MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDLQTEQESQKVMRRGPAAIAAY DSEGNPTPALLGFAKSCSVTVDALTKIQTDKGEWIVFETQSEGTKTKDLLPGLVSQSLESLPIAKPMRWGEGDDEFARPV HWAVMLYGSETLNHKILGVTSGCHSRGHRFHHPQEIRINSAASYEDQMKNAFVIADFATRRQAIIHQVQELAAPLGASVI MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNMHGELLPYFITVSNIASSNPKQVVLGNEKV MRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMYDKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMV GEFPELQGIMGYYYALNDGEEAIVATALNEQYMPRFSGDNLPSTDLGKALSLADRMDTLVGIFAIGQKPTGVKDPFKLRR HALSVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGISADLVHAVRARQDDWLYDLD KRLFALKSFITMPEATSLSAACKRVGNILAQAAYADKKVDIKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKL LASLKEPVDAFFDHVMVMVEEESLKQNRLAHLQRLQELLQGVADISML
Sequences:
>Translated_688_residues MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDLQTEQESQKVMRRGPAAIAAY DSEGNPTPALLGFAKSCSVTVDALTKIQTDKGEWIVFETQSEGTKTKDLLPGLVSQSLESLPIAKPMRWGEGDDEFARPV HWAVMLYGSETLNHKILGVTSGCHSRGHRFHHPQEIRINSAASYEDQMKNAFVIADFATRRQAIIHQVQELAAPLGASVI MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNMHGELLPYFITVSNIASSNPKQVVLGNEKV MRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMYDKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMV GEFPELQGIMGYYYALNDGEEAIVATALNEQYMPRFSGDNLPSTDLGKALSLADRMDTLVGIFAIGQKPTGVKDPFKLRR HALSVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGISADLVHAVRARQDDWLYDLD KRLFALKSFITMPEATSLSAACKRVGNILAQAAYADKKVDIKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKL LASLKEPVDAFFDHVMVMVEEESLKQNRLAHLQRLQELLQGVADISML >Mature_688_residues MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDLQTEQESQKVMRRGPAAIAAY DSEGNPTPALLGFAKSCSVTVDALTKIQTDKGEWIVFETQSEGTKTKDLLPGLVSQSLESLPIAKPMRWGEGDDEFARPV HWAVMLYGSETLNHKILGVTSGCHSRGHRFHHPQEIRINSAASYEDQMKNAFVIADFATRRQAIIHQVQELAAPLGASVI MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNMHGELLPYFITVSNIASSNPKQVVLGNEKV MRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMYDKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMV GEFPELQGIMGYYYALNDGEEAIVATALNEQYMPRFSGDNLPSTDLGKALSLADRMDTLVGIFAIGQKPTGVKDPFKLRR HALSVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGISADLVHAVRARQDDWLYDLD KRLFALKSFITMPEATSLSAACKRVGNILAQAAYADKKVDIKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKL LASLKEPVDAFFDHVMVMVEEESLKQNRLAHLQRLQELLQGVADISML
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=687, Percent_Identity=44.5414847161572, Blast_Score=577, Evalue=1e-166,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 76641; Mature: 76641
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDL CCCHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHH QTEQESQKVMRRGPAAIAAYDSEGNPTPALLGFAKSCSVTVDALTKIQTDKGEWIVFETQ HCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEC SEGTKTKDLLPGLVSQSLESLPIAKPMRWGEGDDEFARPVHWAVMLYGSETLNHKILGVT CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCHHEEEEEEECCHHHCCEEEEEC SGCHSRGHRFHHPQEIRINSAASYEDQMKNAFVIADFATRRQAIIHQVQELAAPLGASVI CCHHHCCCCCCCCCCEEECCCCCHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCC MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNMHGELLPYFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHE TVSNIASSNPKQVVLGNEKVMRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMY EHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHH DKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMVGEFPELQGIMGYYYALNDGE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEECCCC EAIVATALNEQYMPRFSGDNLPSTDLGKALSLADRMDTLVGIFAIGQKPTGVKDPFKLRR CEEEEEHHCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH HALSVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC SADLVHAVRARQDDWLYDLDKRLFALKSFITMPEATSLSAACKRVGNILAQAAYADKKVD CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC IKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKLLASLKEPVDAFFDHVMVMVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EESLKQNRLAHLQRLQELLQGVADISML HHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDL CCCHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHH QTEQESQKVMRRGPAAIAAYDSEGNPTPALLGFAKSCSVTVDALTKIQTDKGEWIVFETQ HCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEC SEGTKTKDLLPGLVSQSLESLPIAKPMRWGEGDDEFARPVHWAVMLYGSETLNHKILGVT CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCHHEEEEEEECCHHHCCEEEEEC SGCHSRGHRFHHPQEIRINSAASYEDQMKNAFVIADFATRRQAIIHQVQELAAPLGASVI CCHHHCCCCCCCCCCEEECCCCCHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCC MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNMHGELLPYFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHE TVSNIASSNPKQVVLGNEKVMRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMY EHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHH DKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMVGEFPELQGIMGYYYALNDGE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEECCCC EAIVATALNEQYMPRFSGDNLPSTDLGKALSLADRMDTLVGIFAIGQKPTGVKDPFKLRR CEEEEEHHCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH HALSVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC SADLVHAVRARQDDWLYDLDKRLFALKSFITMPEATSLSAACKRVGNILAQAAYADKKVD CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC IKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKLLASLKEPVDAFFDHVMVMVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EESLKQNRLAHLQRLQELLQGVADISML HHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA