Click here to switch to the map view.

The map label for this gene is flhF

Identifier: 52842011

GI number: 52842011

Start: 1991351

End: 1992511

Strand: Reverse

Name: flhF

Synonym: lpg1784

Alternate gene names: 52842011

Gene position: 1992511-1991351 (Counterclockwise)

Preceding gene: 52842012

Following gene: 52842010

Centisome position: 58.64

GC content: 40.4

Gene sequence:

>1161_bases
GTGTTGAAGGCAGGAGGCATTATGAAATTAAAACGCTTTGTCGCTGCAGATACTCGCAGTGCCATGCAGCAAATAAAGGC
TGCATTTGGCCCTGATGCCGTTATTTTGTCAAGCCATAACATAAAAGATGGTGTTGAAATAGTTGCTGCTATTGATTTTG
ACGAAACAGTGATATCAACTCAAGCTGCTGTAGCTATAGCAGAACCCCCAAGCCGAACAGAAAAATATTCAGCGCAAACG
CCATTAGACGAAATGCGGCAAGAAATTTTGACACTGAGAGGAATGCTCGAAGCACAGCTGCGTGGAAATGTTGGTATTCA
TGAGCCTTTACATACAGTTATGCTGCAAAAACTCTTGTATTTAGGTGTTAGTCCCAATACGGCGACAATTTGGGCTCGCT
CAGTAAAACCTGATTTGAATCAACAAAGAGCCTGGCAATTTATTTTGTCACAAGTCACAGAGCAATTGCCAATTCGTGAT
TCTAGTAGAATAGAAGAAGGTGGTATCTACGCGTTTGTTGGTCCAACTGGAGTTGGTAAAACAACAACTCTAGCAAAAAT
TGCAGCACGCTTTGCTTTACGATTTGGTGCTGATAAGTTGGGTTTGGTCACTATGGACACCTACCGAATAGCAGCTCAGG
AACAATTAATTCTCTATGGGAAGATTTTGGGAGTTAAAGTCTGTATTGCGCAAGATGAAGTCTCTTTGGCAAGAGTATTG
CGTCAATTAAATGACAAAAAATTAATTTTGATTGATACAGCCGGTATGAATCCTTCTGATGAACGTGTAACCAAACAAAT
GACTGTTTTAAGTAATTATCTGCAATCTATAGAAAAAGTATTGGTATTACCAGCTACCAGTCATTACCAGGTATTAATCG
ATGCGATTAAGCGTTACCAGGCAAATCATGTGGATCAGTGCATTATTACGAAATTGGATGAATCTCTTGCAGTAGGTGGA
GCCATAAGTGCTGTTATTGAATCAAATTTAGCCTTGGGTTATTTAACCGATGGACAACGAGTCCCGGAGGATATCAAAAT
TGCTACGCGTCACCAGCTTGTTGAGTTATTTGCGCAACAAGAACTTCAGTTATTTCAGGAGGAAAGGGACATCAGCAAAA
TACATCCGAATGTTAGGAGAGAGAATTATGTCGAAGCTTAG

Upstream 100 bases:

>100_bases
ATATCCAATGACTTTCATGTTTTGTCTTATCAGGAAATACCTGATAACAAACAAATAAGAATAATTGGAACTGTAGGTTA
GTTTTTGGGGTTGCATAGGT

Downstream 100 bases:

>100_bases
CAAAGGTATAAAAGATCAGGCTTCTGGTCTTAGAAATTTGTCCCGAAACAAACCTGTCAAAGTGATTGCTGTTTCAGCGG
GCAAAGGCGGTGTAGGCAAA

Product: flagellar biosynthesis regulator FlhF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MLKAGGIMKLKRFVAADTRSAMQQIKAAFGPDAVILSSHNIKDGVEIVAAIDFDETVISTQAAVAIAEPPSRTEKYSAQT
PLDEMRQEILTLRGMLEAQLRGNVGIHEPLHTVMLQKLLYLGVSPNTATIWARSVKPDLNQQRAWQFILSQVTEQLPIRD
SSRIEEGGIYAFVGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVKVCIAQDEVSLARVL
RQLNDKKLILIDTAGMNPSDERVTKQMTVLSNYLQSIEKVLVLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGG
AISAVIESNLALGYLTDGQRVPEDIKIATRHQLVELFAQQELQLFQEERDISKIHPNVRRENYVEA

Sequences:

>Translated_386_residues
MLKAGGIMKLKRFVAADTRSAMQQIKAAFGPDAVILSSHNIKDGVEIVAAIDFDETVISTQAAVAIAEPPSRTEKYSAQT
PLDEMRQEILTLRGMLEAQLRGNVGIHEPLHTVMLQKLLYLGVSPNTATIWARSVKPDLNQQRAWQFILSQVTEQLPIRD
SSRIEEGGIYAFVGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVKVCIAQDEVSLARVL
RQLNDKKLILIDTAGMNPSDERVTKQMTVLSNYLQSIEKVLVLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGG
AISAVIESNLALGYLTDGQRVPEDIKIATRHQLVELFAQQELQLFQEERDISKIHPNVRRENYVEA
>Mature_386_residues
MLKAGGIMKLKRFVAADTRSAMQQIKAAFGPDAVILSSHNIKDGVEIVAAIDFDETVISTQAAVAIAEPPSRTEKYSAQT
PLDEMRQEILTLRGMLEAQLRGNVGIHEPLHTVMLQKLLYLGVSPNTATIWARSVKPDLNQQRAWQFILSQVTEQLPIRD
SSRIEEGGIYAFVGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVKVCIAQDEVSLARVL
RQLNDKKLILIDTAGMNPSDERVTKQMTVLSNYLQSIEKVLVLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGG
AISAVIESNLALGYLTDGQRVPEDIKIATRHQLVELFAQQELQLFQEERDISKIHPNVRRENYVEA

Specific function: Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum [H]

COG id: COG1419

COG function: function code N; Flagellar GTP-binding protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6325345, Length=211, Percent_Identity=26.0663507109005, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR020006 [H]

Pfam domain/function: PF00448 SRP54 [H]

EC number: NA

Molecular weight: Translated: 42755; Mature: 42755

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAGGIMKLKRFVAADTRSAMQQIKAAFGPDAVILSSHNIKDGVEIVAAIDFDETVIST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCHHHHHH
QAAVAIAEPPSRTEKYSAQTPLDEMRQEILTLRGMLEAQLRGNVGIHEPLHTVMLQKLLY
HHEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LGVSPNTATIWARSVKPDLNQQRAWQFILSQVTEQLPIRDSSRIEEGGIYAFVGPTGVGK
HCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
TTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVKVCIAQDEVSLARVL
HHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHEEEHEEEEEEEEECCHHHHHHHH
RQLNDKKLILIDTAGMNPSDERVTKQMTVLSNYLQSIEKVLVLPATSHYQVLIDAIKRYQ
HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHH
ANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQRVPEDIKIATRHQLVELFAQQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
ELQLFQEERDISKIHPNVRRENYVEA
HHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLKAGGIMKLKRFVAADTRSAMQQIKAAFGPDAVILSSHNIKDGVEIVAAIDFDETVIST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCHHHHHH
QAAVAIAEPPSRTEKYSAQTPLDEMRQEILTLRGMLEAQLRGNVGIHEPLHTVMLQKLLY
HHEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LGVSPNTATIWARSVKPDLNQQRAWQFILSQVTEQLPIRDSSRIEEGGIYAFVGPTGVGK
HCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
TTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVKVCIAQDEVSLARVL
HHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHEEEHEEEEEEEEECCHHHHHHHH
RQLNDKKLILIDTAGMNPSDERVTKQMTVLSNYLQSIEKVLVLPATSHYQVLIDAIKRYQ
HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHH
ANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQRVPEDIKIATRHQLVELFAQQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
ELQLFQEERDISKIHPNVRRENYVEA
HHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]