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The map label for this gene is motB

Identifier: 52842007

GI number: 52842007

Start: 1988121

End: 1988942

Strand: Reverse

Name: motB

Synonym: lpg1780

Alternate gene names: 52842007

Gene position: 1988942-1988121 (Counterclockwise)

Preceding gene: 52842008

Following gene: 52842006

Centisome position: 58.54

GC content: 34.06

Gene sequence:

>822_bases
ATGGGCAACACAAGCAAGATGAAATCAAAACAAAAGAAAACTGAAGAACATCAGGATAGTCATCGATGGGTCGTATCTTA
TGCTGATTTCATTACCTTATTATTTGCTTTTTTTGTTGTGATGTATGCTATTTCTTCAGTAAATGTATCAAAATATAAAT
CTCTTTCTGAAGGAATGAAGTCGGCATTTAATCAAAAGGATCAAAATAAAGCGACTCAATCGACAGATAACCTTAAAGAT
GGTCCTGAAGAAAAGAAGACCAAGGGAACTTTTAAAGATGGTTTGGATGAACTGAATAAATCACTATCTGAACTTGAAGA
TGGTGATTTCAAATTAAACAGACAAGAGGGATGGGTTGAGATAGATATAAAAGCAGGCTCATTATTTGATTCTGGTAGTG
CTGATATTAAACCAGAAGCATTGATTAAACTAATGAAGCTGGCGGAGAAAATTAAGAATCTACCTTTTACAGTGGTTGTT
GAGGGATACACTGATAATGTGCCTATTGAAACGCCCCAATACCCTTCAAATTGGGAATTATCAGCTGCAAGAGCAGCTAC
TGTTGGTCGCATTTTAAATGGTTTTGGAATTGCCAATCATCGTATTTTGGTTACAGGATATGGTGATCAATACCCAATAA
CGGACAATTACACTGAAGCTGGAAGAAGCCAGAATCGAAGAGTGAATATTCTTATCACTAAAAATAGAAAAGTGGACAGA
ATTCTCAATCCAGATTTAAGTAGAGTCCATTTTAGTGTTATAAGTAATACAAATTCAGTAGAGTTTAATAAAAAGGATAC
TAAAATTAAGGATAAAAAATGA

Upstream 100 bases:

>100_bases
ATTTCTCATAAGGTGCATTTTGATGAAATGGTCGTTGAAGGCCTGGTCGCCATGGCGAGTGGTGAGAGTCCCAATATGCT
GCAGTTAAAGTTAAACAACT

Downstream 100 bases:

>100_bases
CACATATCTTTCTGTATTTGCATGCGATAATTTTTTTACTCTTGGGTAATTATTTATTAAATCAACGAAAAAACATCAAT
AAATTACAGAACAAAATAGA

Product: flagellar motor protein MotD

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MGNTSKMKSKQKKTEEHQDSHRWVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKD
GPEEKKTKGTFKDGLDELNKSLSELEDGDFKLNRQEGWVEIDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVV
EGYTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRILVTGYGDQYPITDNYTEAGRSQNRRVNILITKNRKVDR
ILNPDLSRVHFSVISNTNSVEFNKKDTKIKDKK

Sequences:

>Translated_273_residues
MGNTSKMKSKQKKTEEHQDSHRWVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKD
GPEEKKTKGTFKDGLDELNKSLSELEDGDFKLNRQEGWVEIDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVV
EGYTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRILVTGYGDQYPITDNYTEAGRSQNRRVNILITKNRKVDR
ILNPDLSRVHFSVISNTNSVEFNKKDTKIKDKK
>Mature_272_residues
GNTSKMKSKQKKTEEHQDSHRWVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKDG
PEEKKTKGTFKDGLDELNKSLSELEDGDFKLNRQEGWVEIDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVE
GYTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRILVTGYGDQYPITDNYTEAGRSQNRRVNILITKNRKVDRI
LNPDLSRVHFSVISNTNSVEFNKKDTKIKDKK

Specific function: May be involved in some transport function [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788198, Length=267, Percent_Identity=26.9662921348315, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 30810; Mature: 30679

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNTSKMKSKQKKTEEHQDSHRWVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SAFNQKDQNKATQSTDNLKDGPEEKKTKGTFKDGLDELNKSLSELEDGDFKLNRQEGWVE
HHHCCCHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCEEE
IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCC
SAARAATVGRILNGFGIANHRILVTGYGDQYPITDNYTEAGRSQNRRVNILITKNRKVDR
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHH
ILNPDLSRVHFSVISNTNSVEFNKKDTKIKDKK
HCCCCHHHEEEHHHCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
GNTSKMKSKQKKTEEHQDSHRWVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SAFNQKDQNKATQSTDNLKDGPEEKKTKGTFKDGLDELNKSLSELEDGDFKLNRQEGWVE
HHHCCCHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCEEE
IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCC
SAARAATVGRILNGFGIANHRILVTGYGDQYPITDNYTEAGRSQNRRVNILITKNRKVDR
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHH
ILNPDLSRVHFSVISNTNSVEFNKKDTKIKDKK
HCCCCHHHEEEHHHCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8200532 [H]