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The map label for this gene is 52842000

Identifier: 52842000

GI number: 52842000

Start: 1979015

End: 1979965

Strand: Direct

Name: 52842000

Synonym: lpg1773

Alternate gene names: NA

Gene position: 1979015-1979965 (Clockwise)

Preceding gene: 52841999

Following gene: 52842001

Centisome position: 58.24

GC content: 34.7

Gene sequence:

>951_bases
ATGAAATTAAAAGAAATCAGAACAATCATCTACAACTATGGCGAGGAAGAAATCCTTAAGCATATCTTGTATGAATCCAC
AGAGCCTATCTTAATTAAAATACCTGATTTTACCAGCCAATTTTCACTCGATTATTTTGAACAACTCACTCAGGCCAAAA
CTACTTATTGTACCTTTGAAAACAAGCGATGTGTTGATTTCCAAGCGGGCAATTTTGCTGAGGTCATCCAACAAATAAAA
AGCAACAAACCCATTCGTATTTTTGGGCAAATTTTGTCTAGAGAACGCTCTAAGGAAATAGAAAAGCATGTGCCACTTTG
GCAAAAAATTCCTTTCAGACCAAGGTATTTTAGAGAGACCAAAAAAGTGGCTTATTTCTTTGGAGGTAAAGGCGCTGTCT
CAGAAATGCATTTTGACCGAGAACATTGCTGCAATCTCCATTTATGTTTGAGTGGGAAAAAACAAGTATTGCTGTTTACC
AGAAAACAAAGTGACAACCTTTACAAACTCCCCTTTATCGGAGATTCTTTAATTGACTTCACTCAACCCCTGGATGCTTT
AATTCAACAATACCCCAGACTGAATCAGGCTGAAGGATATCAGGTTCTACTTGAGAAAGGCGATATGTTATTCATGCCTA
GAAATTGTTGGCATTACACAGAGTATCTTGATGCGTCATCTGCCGCTACTTATGTTTTTTATCCTAAAAAATTTTTCCAA
TATTATGGATATTTTACCGGCAATTTTTTTTTAGGGTATAAAGAAGAATCCGGTTTTAAAATTTATAGATGGCCTTTTTT
TGAGAAATTCAGCCGTTACTATGCATTATCAACAGGAGTCTCCAAAATCGTGTTTAAAATAATAGAAAAAATTTTATTTC
TATTCATGCTGCCTATAATTAGCCTATTTAACATTATTTCTCATAAATTTAACCCCCGCAGAGTATTTTAA

Upstream 100 bases:

>100_bases
GTATGCATAAATCACAATCAAGCCATGATTTTTTTAATGATATAATATAGATTATTGAGATAAAAATATTTATAAATTAC
TCCATTCAACAGGTAATTTA

Downstream 100 bases:

>100_bases
CCCACAACTTATCCACAGAATAATCCCAGATTATTCTATTGACCAAAGCAAAAAAACACATTATCTTGTTATTAAAACCC
CTAAAACACCCTATATATTG

Product: small stress protein PASS1

Products: NA

Alternate protein names: JmjC Domain Protein; Transcription Factor Jumonji JmjC Domain Protein; Eukaryotic Small Stress Protein; Transcription Factor Jumonji Domain-Containing Protein

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKLKEIRTIIYNYGEEEILKHILYESTEPILIKIPDFTSQFSLDYFEQLTQAKTTYCTFENKRCVDFQAGNFAEVIQQIK
SNKPIRIFGQILSRERSKEIEKHVPLWQKIPFRPRYFRETKKVAYFFGGKGAVSEMHFDREHCCNLHLCLSGKKQVLLFT
RKQSDNLYKLPFIGDSLIDFTQPLDALIQQYPRLNQAEGYQVLLEKGDMLFMPRNCWHYTEYLDASSAATYVFYPKKFFQ
YYGYFTGNFFLGYKEESGFKIYRWPFFEKFSRYYALSTGVSKIVFKIIEKILFLFMLPIISLFNIISHKFNPRRVF

Sequences:

>Translated_316_residues
MKLKEIRTIIYNYGEEEILKHILYESTEPILIKIPDFTSQFSLDYFEQLTQAKTTYCTFENKRCVDFQAGNFAEVIQQIK
SNKPIRIFGQILSRERSKEIEKHVPLWQKIPFRPRYFRETKKVAYFFGGKGAVSEMHFDREHCCNLHLCLSGKKQVLLFT
RKQSDNLYKLPFIGDSLIDFTQPLDALIQQYPRLNQAEGYQVLLEKGDMLFMPRNCWHYTEYLDASSAATYVFYPKKFFQ
YYGYFTGNFFLGYKEESGFKIYRWPFFEKFSRYYALSTGVSKIVFKIIEKILFLFMLPIISLFNIISHKFNPRRVF
>Mature_316_residues
MKLKEIRTIIYNYGEEEILKHILYESTEPILIKIPDFTSQFSLDYFEQLTQAKTTYCTFENKRCVDFQAGNFAEVIQQIK
SNKPIRIFGQILSRERSKEIEKHVPLWQKIPFRPRYFRETKKVAYFFGGKGAVSEMHFDREHCCNLHLCLSGKKQVLLFT
RKQSDNLYKLPFIGDSLIDFTQPLDALIQQYPRLNQAEGYQVLLEKGDMLFMPRNCWHYTEYLDASSAATYVFYPKKFFQ
YYGYFTGNFFLGYKEESGFKIYRWPFFEKFSRYYALSTGVSKIVFKIIEKILFLFMLPIISLFNIISHKFNPRRVF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37740; Mature: 37740

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKEIRTIIYNYGEEEILKHILYESTEPILIKIPDFTSQFSLDYFEQLTQAKTTYCTFE
CCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHEEEEEC
NKRCVDFQAGNFAEVIQQIKSNKPIRIFGQILSRERSKEIEKHVPLWQKIPFRPRYFRET
CCEEEEECCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHH
KKVAYFFGGKGAVSEMHFDREHCCNLHLCLSGKKQVLLFTRKQSDNLYKLPFIGDSLIDF
HHEEEEECCCCCHHHHHCCHHHHCCEEEEECCCCEEEEEEECCCCCEEECCCCCCHHHHH
TQPLDALIQQYPRLNQAEGYQVLLEKGDMLFMPRNCWHYTEYLDASSAATYVFYPKKFFQ
HHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCHHHHHHHCCCCCEEEEEEHHHHHH
YYGYFTGNFFLGYKEESGFKIYRWPFFEKFSRYYALSTGVSKIVFKIIEKILFLFMLPII
HHCEEECCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLFNIISHKFNPRRVF
HHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKLKEIRTIIYNYGEEEILKHILYESTEPILIKIPDFTSQFSLDYFEQLTQAKTTYCTFE
CCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHEEEEEC
NKRCVDFQAGNFAEVIQQIKSNKPIRIFGQILSRERSKEIEKHVPLWQKIPFRPRYFRET
CCEEEEECCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHH
KKVAYFFGGKGAVSEMHFDREHCCNLHLCLSGKKQVLLFTRKQSDNLYKLPFIGDSLIDF
HHEEEEECCCCCHHHHHCCHHHHCCEEEEECCCCEEEEEEECCCCCEEECCCCCCHHHHH
TQPLDALIQQYPRLNQAEGYQVLLEKGDMLFMPRNCWHYTEYLDASSAATYVFYPKKFFQ
HHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCHHHHHHHCCCCCEEEEEEHHHHHH
YYGYFTGNFFLGYKEESGFKIYRWPFFEKFSRYYALSTGVSKIVFKIIEKILFLFMLPII
HHCEEECCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLFNIISHKFNPRRVF
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA