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The map label for this gene is recJ

Identifier: 52841691

GI number: 52841691

Start: 1611889

End: 1613628

Strand: Direct

Name: recJ

Synonym: lpg1461

Alternate gene names: 52841691

Gene position: 1611889-1613628 (Clockwise)

Preceding gene: 52841690

Following gene: 52841692

Centisome position: 47.44

GC content: 40.17

Gene sequence:

>1740_bases
ATGCTGATTAAACAACGACAACAGCCTGAGTTTACTGTCAATTTACCTAATGTACCTGATGTATTAAAACGTATTTATAT
AACACGAGGCATTAGTGACGAATCTCAACTTGATAAACAATTACAAACATTACTTCCTTTTCACACTTTAAAAGGCATTA
ATGAAGCTTGTCTAAGATTAGAGAATGCTTTGCGTTCAGAGCAACGTATTCTTATTATCGGTGATTTTGATGCCGATGGG
GCAACTTCTACGGCATTAGCCATTACTGCCTTGCGTGCTATGGGTGCAAGGTTTGTTGAGTACTTGGTACCTAATCGATT
TGAATTTGGTTATGGTCTTACTCCCGCTATTGTTGAAGTGGCAAGCAAATGGCAACCTGATTTAATTATCACTGTTGATA
ATGGTATAGCCAGTTTTGAAGGAGTAGATGCGGCTAATAAAATGGGAATAGATGTATTAATTACTGATCATCATTTACCA
GCAGAATCACTACCTGATGCTTGTGCAATTGTTAATCCCAATCAGCCTGGTTGTTTATTTCCAAGCAAGTCAATTGCGGG
AGTTGGCGTTATTTTTTACGTTATGCTGGCATTGCGAAGGCATCTTTCCAATTGTAACTGGTTTAATGAAATCAACATGG
CTGAGCCTAATATGGCGAGTTTTCTGGATTTGGTTGCATTAGGGACTGTAGCCGACGTTGTGGGGCTTGACCAAAATAAC
AGGATCATGGTTAATCAAGGCATGATGCGTATTCGTCAAGGACAATGCAGAGAGGGAATAAAAGCCTTGATTGAAATTGC
TGGTAGGGATTATTCCAGGCTAAGAGAGTCTGACCTTGGTTTTGCCATAGCGCCAAGATTAAACGCCGCAGGCCGTTTGG
ATGATATGTCGCTTGGTATTGAATGTTTGATTACGACGGATCCAAAAATGGCAAGAAATTTCTGTCAACAGTTGGATGAG
TTGAATCTGGAAAGAAGACAAATAGAATCTGAAATGAAAGAGCAAGCCATGCTTGCTTTGGAGAAATTGTCAATTAACGA
TGAAGAGAATAAGCACTTACCGGTTGCCTTGTGCCTTCATGATAAAACCTGGCATCAAGGAGTGATAGGAATCTTGGCAG
GAAGGATGAAGGAAAAATATCATCGTCCTGTCATTGCATTTGCTTCTGTCAGTGAGCATGAGTTAAAGGGCTCAGCACGT
TCTGTCCCCGATTTAAACATTAGAGATGTATTGGCAGCTGTTGATAAAGACAATCCAGGACTGATTCTTAAATTCGGAGG
ACATGCTATGGCTGCTGGCTTAAGTATTAGCCCAGAATTATTGAATGATTTTCGCTCAGCATTCGTGTCAGAGGTTCTGA
AACATCTTGACTTATCACAGTGCGAAGGAGAAATACTGACGGACGGACCATTGCAATCCCATGAACTGAGTTTGGAAACA
GCACAATTAATACAACAAGCTGGTCCTTGGGGCCAAGCGTTTGCAGAACCCGTATTTGATAATGTATTTGAAATTCTGGA
TCAACGAATTGTCGGTAAAAATCATTTAAAAATGACATTAATTTCCTCACAAGGAGGGGAGCTACTTGATGCCATTGCTT
TTAATGTGGATTTAAAATCCTGGCCTAATCATAGGATTAAGTACATTCATGCCGCCTATAAACTGGATATCAATTTTTAT
CAGGGGAGAACAAGGCTCCAATTGCTTATCCAGGCAATGAATCCTGTTCAGCAAGCATAA

Upstream 100 bases:

>100_bases
GTTGAAATAAAAAAAATACCGGCACATTGGTACTGGAACAATTGTGTTTTAATTAAAGCAAAATCTCATTGGTTTACTCG
ATTATGGAGAAGTCTGACGC

Downstream 100 bases:

>100_bases
ACTCTTAAATTGATGCTATTTTTGTGTATTTCTCAAACAACAATGTATAATGTTATATTTGCTTTAAATTGATATTAAAC
GTGGTTAATAGTATTTTTTC

Product: single stranded DNA specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRLENALRSEQRILIIGDFDADG
ATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPDLIITVDNGIASFEGVDAANKMGIDVLITDHHLP
AESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINMAEPNMASFLDLVALGTVADVVGLDQNN
RIMVNQGMMRIRQGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMARNFCQQLDE
LNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGILAGRMKEKYHRPVIAFASVSEHELKGSAR
SVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
AQLIQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGELLDAIAFNVDLKSWPNHRIKYIHAAYKLDINFY
QGRTRLQLLIQAMNPVQQA

Sequences:

>Translated_579_residues
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRLENALRSEQRILIIGDFDADG
ATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPDLIITVDNGIASFEGVDAANKMGIDVLITDHHLP
AESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINMAEPNMASFLDLVALGTVADVVGLDQNN
RIMVNQGMMRIRQGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMARNFCQQLDE
LNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGILAGRMKEKYHRPVIAFASVSEHELKGSAR
SVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
AQLIQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGELLDAIAFNVDLKSWPNHRIKYIHAAYKLDINFY
QGRTRLQLLIQAMNPVQQA
>Mature_579_residues
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRLENALRSEQRILIIGDFDADG
ATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPDLIITVDNGIASFEGVDAANKMGIDVLITDHHLP
AESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINMAEPNMASFLDLVALGTVADVVGLDQNN
RIMVNQGMMRIRQGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMARNFCQQLDE
LNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGILAGRMKEKYHRPVIAFASVSEHELKGSAR
SVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
AQLIQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGELLDAIAFNVDLKSWPNHRIKYIHAAYKLDINFY
QGRTRLQLLIQAMNPVQQA

Specific function: Single-stranded-DNA-specific exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products whi

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=573, Percent_Identity=51.1343804537522, Blast_Score=595, Evalue=1e-171,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 64325; Mature: 64325

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRL
CCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
ENALRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEV
HHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
ASKWQPDLIITVDNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLF
HHCCCCCEEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCHHCCCCCEEEECCCCCCCCC
PSKSIAGVGVIFYVMLALRRHLSNCNWFNEINMAEPNMASFLDLVALGTVADVVGLDQNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
RIMVNQGMMRIRQGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGI
EEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCE
ECLITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLH
EEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
DKTWHQGVIGILAGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPG
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHCCCCCC
LILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
EEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCHHCCHHH
AQLIQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGELLDAIAFNVDLKS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHEECCCCC
WPNHRIKYIHAAYKLDINFYQGRTRLQLLIQAMNPVQQA
CCCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRL
CCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
ENALRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEV
HHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
ASKWQPDLIITVDNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLF
HHCCCCCEEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCHHCCCCCEEEECCCCCCCCC
PSKSIAGVGVIFYVMLALRRHLSNCNWFNEINMAEPNMASFLDLVALGTVADVVGLDQNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
RIMVNQGMMRIRQGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGI
EEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCE
ECLITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLH
EEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
DKTWHQGVIGILAGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPG
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHCCCCCC
LILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
EEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCHHCCHHH
AQLIQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGELLDAIAFNVDLKS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHEECCCCC
WPNHRIKYIHAAYKLDINFYQGRTRLQLLIQAMNPVQQA
CCCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8168497 [H]