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The map label for this gene is scpB [H]

Identifier: 52841676

GI number: 52841676

Start: 1594225

End: 1594815

Strand: Direct

Name: scpB [H]

Synonym: lpg1446

Alternate gene names: 52841676

Gene position: 1594225-1594815 (Clockwise)

Preceding gene: 52841675

Following gene: 52841677

Centisome position: 46.92

GC content: 38.07

Gene sequence:

>591_bases
CTGCATGAGATGATTGACAATGAATTAAAAAATATTGTTGAAGCTTTGGTATTATCCAGTAATGAGCCCGTTACTTTAGA
AAAAATACAAGAAACCTTTGATGAGTGGCAAAGACCAACACTAGAAGATTTGCAGGCTATAATAGAGAGCTTAAAGGTAG
ATTATTCTTACCGTGCTTTTGAGCTTATCCAGGTTGCAGGTGGTTTTAAGGTACAAACAAAATCCAAATATGCCACTTGG
GTTGCTCGTCTCCAAATCGAGAAGCCAGCAAAGTATTCGCGCGCACTGCTTGAAACTTTGGCAATAATTGCTTACAAGCA
ACCTGTTACGCGCGCTGATATTGAAGACATTAGAGGAGTTGCCGTTAACAGCCAGATTATAAAAACGTTAATGGAAAGGG
AATGGATTCGTATAGCAGGCTATAAGGATGTAGTAGGAAAGCCAGCTGTTTATACAACGACAAAAGAATTTTTAAATTAC
TTTAACTTAAATTACTTAAGTGAACTTCCTCCCTTACCTGAAATAATGGATACATTAACCTTGCACGAGGCAACCCAACC
TATAAAAGAGTGTACGCAAAATGAGCAGTGA

Upstream 100 bases:

>100_bases
ATGGGATTGGTTGTGAGTTTTTTAGCTATTCTTGAACTGGCTAAGCAGTCTTTATTGATCATTACGCAAACTCAGCCATT
TTCACCTATACATTTGCAGG

Downstream 100 bases:

>100_bases
AAGATTACAGAAAATATTAAGTCAAGCCGGACTTGGATCTCGTCGTGAAATGGAGCGGTGGATTGATAATGGTTGGGTGC
AGGTTAATGGCAAACCAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MHEMIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKVQTKSKYATW
VARLQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNY
FNLNYLSELPPLPEIMDTLTLHEATQPIKECTQNEQ

Sequences:

>Translated_196_residues
MHEMIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKVQTKSKYATW
VARLQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNY
FNLNYLSELPPLPEIMDTLTLHEATQPIKECTQNEQ
>Mature_196_residues
MHEMIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKVQTKSKYATW
VARLQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNY
FNLNYLSELPPLPEIMDTLTLHEATQPIKECTQNEQ

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 22596; Mature: 22596

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEMIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAF
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH
ELIQVAGGFKVQTKSKYATWVARLQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGV
HHHHHHCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
AVNSQIIKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPLPEIMDTLT
HHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHH
LHEATQPIKECTQNEQ
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHEMIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAF
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH
ELIQVAGGFKVQTKSKYATWVARLQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGV
HHHHHHCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
AVNSQIIKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPLPEIMDTLT
HHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHH
LHEATQPIKECTQNEQ
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]