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The map label for this gene is yciO [H]

Identifier: 52841673

GI number: 52841673

Start: 1591316

End: 1591981

Strand: Direct

Name: yciO [H]

Synonym: lpg1443

Alternate gene names: 52841673

Gene position: 1591316-1591981 (Clockwise)

Preceding gene: 52841672

Following gene: 52841674

Centisome position: 46.83

GC content: 40.09

Gene sequence:

>666_bases
ATGCACGCCTATTTGGCAAGAATGGAACATGAAACAGGGGACTTTATGAGTCAGTTTTTTGCTTTACATCCAGATAATCC
TCAAGCACGCTTGTTGAGAAAAGCAGTTTCAATTATTGAAGAAGGGGGGCTTATCGTTTACCCGACAGATTCTGGCTATG
CTTTGGGCTGTAGTTTGGGCAATAAATCAGCCCTGGAGCGTATTCGCCGCTTACGCCAATTGGATAAGCATCATAATATG
ACCCTGGTTTGTCGTGACTTATCCCAGTTAGGTACTTATGCAAAGGTTTCTAATCCAATTTTTAGATTATTGAAGGCTTT
TACTCCAGGCTCTTATACCTTTATTCTTAATGCTACACATGAAGTGCCTCGTTTGATGCTCCACCCAAAACGAAGAACAT
TGGGGTTAAGAGTACCTGATAACACGATTACTTTGTCTTTATTGGAGTGTCTGGAAGCCCCTTTAATGAGCACCACTTTA
ATTTTACCAGGAGCTGAAGCGCCATTAAGCGAGCCTGAAGCAATTAAAGATTTATTAGGCAACCAAATTGATTTAATAAT
TGATGGTGGAAATTGTGGTCATGAACCCACTACAGTAGTAGATTTAACTGGAGATTATCCGATAATTATAAGAGAGGGAA
AAGGAGATCCTGAACCCTTTAAGTAA

Upstream 100 bases:

>100_bases
TGTGTGAGCGATTTCATTTGCTCGCTTCATCAGGATCAGATTACCATAGTGACGCTCAATCTTGTATAAATCTGGGGCGC
CAGAGACAATTACCAATAAT

Downstream 100 bases:

>100_bases
TGGAATACAGTCGCGGTTTTGTTAGTATTTAGTAAAAGAGAATTTTATGTGCTCCTACCAGACTAGAGCTGACACCATTG
AATTTTATTTTGTCCAGTTA

Product: translation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MHAYLARMEHETGDFMSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNM
TLVCRDLSQLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTL
ILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPIIIREGKGDPEPFK

Sequences:

>Translated_221_residues
MHAYLARMEHETGDFMSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNM
TLVCRDLSQLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTL
ILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPIIIREGKGDPEPFK
>Mature_221_residues
MHAYLARMEHETGDFMSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNM
TLVCRDLSQLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTL
ILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPIIIREGKGDPEPFK

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=60.4878048780488, Blast_Score=263, Evalue=7e-72,
Organism=Drosophila melanogaster, GI78707274, Length=219, Percent_Identity=25.1141552511416, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 24512; Mature: 24512

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAYLARMEHETGDFMSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLG
CCHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCC
NKSALERIRRLRQLDKHHNMTLVCRDLSQLGTYAKVSNPIFRLLKAFTPGSYTFILNATH
CHHHHHHHHHHHHHHHHCCEEEEEECHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
EVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLG
HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHC
NQIDLIIDGGNCGHEPTTVVDLTGDYPIIIREGKGDPEPFK
CCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MHAYLARMEHETGDFMSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLG
CCHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCC
NKSALERIRRLRQLDKHHNMTLVCRDLSQLGTYAKVSNPIFRLLKAFTPGSYTFILNATH
CHHHHHHHHHHHHHHHHCCEEEEEECHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
EVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLG
HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHC
NQIDLIIDGGNCGHEPTTVVDLTGDYPIIIREGKGDPEPFK
CCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]