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The map label for this gene is 52841639

Identifier: 52841639

GI number: 52841639

Start: 1555198

End: 1555968

Strand: Reverse

Name: 52841639

Synonym: lpg1409

Alternate gene names: NA

Gene position: 1555968-1555198 (Counterclockwise)

Preceding gene: 52841643

Following gene: 52841637

Centisome position: 45.79

GC content: 39.04

Gene sequence:

>771_bases
ATGACAATACTTGTTTTTGATATTGAAACAATTCCAGATATTGAGTCAGGGCGAAGGCTTTTTGCACTAGATGGCTTATC
AGATGAAGATACGGCATGCGCTATGTTTGCCTTAAGGCGTGAGAAAGCAGGCAATGATTTTTTGCCTCATTACTTACAAA
AAATCTGCGCTATATCAGTGGTAATCAGTCATGGAAATCAAATAAAAGTATGGTCTCTTGGCGATGAAAATTCTGATGAA
AAAGAATTAATAACCCGTTTTTTTGCTGGAATTGACAAACATACACCCACCCTGGTGAGCTGGAATGGGAGCGGTTTTGA
TCTTCCTGTACTGCATTACCGATCACTATATCATAGTATTAGCGCGCCCACTTATTGGGAGACAGGAGAAAATCAACAAA
CCTTCAAATGGAACAATTATCTAAGCCGCTTTCACTACCGACATATTGATCTAATGGATGTTCTTGCAGGATATCAGAAC
AGAGCTTTTGCCCCTCTTGATGACATTTCAACCATGCTAGGTTTCCCTGGAAAAATGGGAATGAGTGGCTCTAAAGTTTG
GGAACAATACCAGGCAGGCCAATTGAAAGAAATAAGAGATTATTGTGAAACAGATGTACTCAACACCTATTGTGTGTATT
TAAGATTTGAGCTGATGCGTGGCACAATTAGCCAGGAAGGTTATGACAGAAACATAGCACAACTCAAAAACTATTTAGGT
GCTGAGAAAGACAAGATGCATTTACAGGAATTTCTCAAAAAAATGCTCTGA

Upstream 100 bases:

>100_bases
TCAGATATCCCAATTGTGATTTTGACAAATCCGAGACTTGTCGATAATTTCAAGCAAATTTGCAAAAATAAGAATGAAGA
CCGAATTGGACTAATAAATT

Downstream 100 bases:

>100_bases
AGATCTTAATCGTCACTGTAAACGAGTTGTCCTCTCTAGATAATGGCGGCAGCTAAAAAGGCCTCTGCCCCGTAAAAGTA
AGGCTATGACTATCTGCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: Polysaccharide Biosynthesis Protein; 3-5' Exonuclease PolB-Like Protein; Propable PolB; Polysaccharide Biosynthesis Protein WlaX; Lipoprotein SmpA/OmlA Family; 3&Apos; Large-Conductance Mechanosensitive Channel

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTILVFDIETIPDIESGRRLFALDGLSDEDTACAMFALRREKAGNDFLPHYLQKICAISVVISHGNQIKVWSLGDENSDE
KELITRFFAGIDKHTPTLVSWNGSGFDLPVLHYRSLYHSISAPTYWETGENQQTFKWNNYLSRFHYRHIDLMDVLAGYQN
RAFAPLDDISTMLGFPGKMGMSGSKVWEQYQAGQLKEIRDYCETDVLNTYCVYLRFELMRGTISQEGYDRNIAQLKNYLG
AEKDKMHLQEFLKKML

Sequences:

>Translated_256_residues
MTILVFDIETIPDIESGRRLFALDGLSDEDTACAMFALRREKAGNDFLPHYLQKICAISVVISHGNQIKVWSLGDENSDE
KELITRFFAGIDKHTPTLVSWNGSGFDLPVLHYRSLYHSISAPTYWETGENQQTFKWNNYLSRFHYRHIDLMDVLAGYQN
RAFAPLDDISTMLGFPGKMGMSGSKVWEQYQAGQLKEIRDYCETDVLNTYCVYLRFELMRGTISQEGYDRNIAQLKNYLG
AEKDKMHLQEFLKKML
>Mature_255_residues
TILVFDIETIPDIESGRRLFALDGLSDEDTACAMFALRREKAGNDFLPHYLQKICAISVVISHGNQIKVWSLGDENSDEK
ELITRFFAGIDKHTPTLVSWNGSGFDLPVLHYRSLYHSISAPTYWETGENQQTFKWNNYLSRFHYRHIDLMDVLAGYQNR
AFAPLDDISTMLGFPGKMGMSGSKVWEQYQAGQLKEIRDYCETDVLNTYCVYLRFELMRGTISQEGYDRNIAQLKNYLGA
EKDKMHLQEFLKKML

Specific function: Unknown

COG id: COG3298

COG function: function code L; Predicted 3'-5' exonuclease related to the exonuclease domain of PolB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29568; Mature: 29437

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILVFDIETIPDIESGRRLFALDGLSDEDTACAMFALRREKAGNDFLPHYLQKICAISV
CEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VISHGNQIKVWSLGDENSDEKELITRFFAGIDKHTPTLVSWNGSGFDLPVLHYRSLYHSI
HEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
SAPTYWETGENQQTFKWNNYLSRFHYRHIDLMDVLAGYQNRAFAPLDDISTMLGFPGKMG
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
MSGSKVWEQYQAGQLKEIRDYCETDVLNTYCVYLRFELMRGTISQEGYDRNIAQLKNYLG
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
AEKDKMHLQEFLKKML
CCHHHHHHHHHHHHHC
>Mature Secondary Structure 
TILVFDIETIPDIESGRRLFALDGLSDEDTACAMFALRREKAGNDFLPHYLQKICAISV
EEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VISHGNQIKVWSLGDENSDEKELITRFFAGIDKHTPTLVSWNGSGFDLPVLHYRSLYHSI
HEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
SAPTYWETGENQQTFKWNNYLSRFHYRHIDLMDVLAGYQNRAFAPLDDISTMLGFPGKMG
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
MSGSKVWEQYQAGQLKEIRDYCETDVLNTYCVYLRFELMRGTISQEGYDRNIAQLKNYLG
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
AEKDKMHLQEFLKKML
CCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA