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The map label for this gene is dnaQ

Identifier: 52841614

GI number: 52841614

Start: 1531824

End: 1532579

Strand: Direct

Name: dnaQ

Synonym: lpg1384

Alternate gene names: 52841614

Gene position: 1531824-1532579 (Clockwise)

Preceding gene: 52841613

Following gene: 52841616

Centisome position: 45.08

GC content: 34.66

Gene sequence:

>756_bases
ATGATTTGGTTGATGCTTTGGCAAATTTGGGTATTGAGGAATTATCATAGAGTTATGAGACAAGTTATATTAGATACCGA
AACGACTGGTATTGGACCTGAACAGGGACATAGAGTAATTGAAATAGGTTGTATTGAGCTTATCGATAGAAAATTAACCG
GCAAGCACTTCCACATATACCTTAATCCACAGCGTGAGGTGGATGAAGGGGCATTTAGAGTTCACGGTATAAGTACTGAG
TTTTTGCAAGATAAACCTTTATTCCAGGATATTGTGACTGAATTTATACAATTTGTGGAAGGTTCAGAATTAATTATTCA
CAATGCTCCATTTGATGTTGGATTTCTTAATTCTGAATTAAAACATGTGAAATGGAATAAGACATTAGAAGATTATTGCC
GGATTCTTGATACTTTGATTTTAGCCAGAGAAAAACATCCTGGACAGCGTAATAGTTTGGATGCTTTGTGTAAGCGTTAT
GAAATAGATCATTTTAATCGTGAACTGCACGGTGCTTTGCTTGATGCCGAAATATTAGCTTATGTGTATTTGGCAATGAC
AGGTGGCCAAAGCAGTTTATTTACTGAGGTTGAATCCAGTTTGAGTCAATCAAAAATAAAAACTCAAGAGATAAAGTCAT
TAAGTTTAAAAAAGCCAGTAATAATGAAGGCTAATGAAGAGGAATTAATGCAACATCAAAGCTTCGTTGAATTTATATCT
AAAAAATCCGGTATCAATCATTGGGAAGAGGTATAG

Upstream 100 bases:

>100_bases
TTGGTTAAAAATGCTGAATTATGGAAATCATTAGATAATCTGGCTTCTATTCATAATATTCATTGGCATTGGGTTAAAGG
GCACTCCGGCCATTTGGAAA

Downstream 100 bases:

>100_bases
CTCTCATGATTATATAAATTATAAATAATTATTCTGTTACACTTATTATTCGGTTTCGCGTCTGCCAATACTAAACCTTA
TACAATAACAAAATTCTTCA

Product: DNA polymerase III, epsilon subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MIWLMLWQIWVLRNYHRVMRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTE
FLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTLILAREKHPGQRNSLDALCKRY
EIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFIS
KKSGINHWEEV

Sequences:

>Translated_251_residues
MIWLMLWQIWVLRNYHRVMRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTE
FLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTLILAREKHPGQRNSLDALCKRY
EIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFIS
KKSGINHWEEV
>Mature_251_residues
MIWLMLWQIWVLRNYHRVMRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTE
FLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTLILAREKHPGQRNSLDALCKRY
EIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFIS
KKSGINHWEEV

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=238, Percent_Identity=48.3193277310924, Blast_Score=233, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 29246; Mature: 29246

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWLMLWQIWVLRNYHRVMRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIY
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCEEEEEHHHHHHHHHCCCCEEEEE
LNPQREVDEGAFRVHGISTEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSEL
ECCCCCCCCCCEEEECCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHH
KHVKWNKTLEDYCRILDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILA
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVYLAMTGGQSSLFTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFIS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHH
KKSGINHWEEV
HHCCCCHHHCC
>Mature Secondary Structure
MIWLMLWQIWVLRNYHRVMRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIY
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCEEEEEHHHHHHHHHCCCCEEEEE
LNPQREVDEGAFRVHGISTEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSEL
ECCCCCCCCCCEEEECCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHH
KHVKWNKTLEDYCRILDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILA
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVYLAMTGGQSSLFTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFIS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHH
KKSGINHWEEV
HHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]