Click here to switch to the map view.

The map label for this gene is yybO [H]

Identifier: 52841565

GI number: 52841565

Start: 1473056

End: 1474354

Strand: Reverse

Name: yybO [H]

Synonym: lpg1335

Alternate gene names: 52841565

Gene position: 1474354-1473056 (Counterclockwise)

Preceding gene: 52841566

Following gene: 52841564

Centisome position: 43.39

GC content: 40.42

Gene sequence:

>1299_bases
ATGGCTCATTACAATGTACAATCCGAATCGCTCAATAAAGCAAGTGTCAGCTTAATTATGCCCTGGATGGTGTGGGGCTT
GGGTTGCTTATTCTATTTTTATGAATGCTTATTGCAAGTATCCCCAAGCGTAATGAGTAATGAACTCATGAGAGATTTCT
CGGTAACAAGTCATACTTTAGGGATTCTATCGGGCATTTATTTCTATTCTTATGCCGCCATGCAGCTTCCTGGTGGTGTT
CTAATGGATTATTTTGGCCCACAACGTTTATTAACTCTTGCCACAGTGGTTTGTGCCGTGAGCACTATAGCCTTTGGCAT
GACAGATAATTTCTTCATGGCCTGTATCGCAAGGCTGATGATTGGATTTGGTTCCGCATTTGCTGCTGTTGGCACCATGA
AATTGGCAGCCAACTGGTTTCCAGCACAAAAATTCGCATTATTGACTGGCTTGATGGTTACCATAGGCATGATGGGTGCA
ATAGGTGGAGAAACGCCTTTGGCTCTTCTAATTGATAATTTTGGCTGGCGGGAAAGCATGATTATAATGGGTAGTGTTGG
ACTTCTTTTGGCAACTTTGCTCATCTTGATTGCCAGAGATACTCCCAAGAATTTTTCTCCTGCTATCCATCAACATCCTG
TCGAGGAAGAACGTTTAATCCCAAGTTTATTCACATTGATAAAAAATAAGCAACTTTGGCTAGTAGCTACCTATGGCGGG
TTAATGTACATGGCAACACCCGTGTTTTGCGGGCTTTGGGGGGTTCCTTTTCTGATGAATAAAATGCTAATAGCAAAATC
TACAGCAGCTAATTTTATCTCATTGGTCTTTGTGGGTTGGGCAATAGCCAGTCCTTTATGGGGTCTGTTTTCAAACCGTA
TTGGATTACGTAAGCCGCCTATGTATATTGGATGTGTAGGGGCAATGATTTGTTCTTTGCTCTTTATTTTTGCTCCCATC
ACTTCTTCAATTACTATGGAAATCCTGCTGTTTGCATTTGGTATCTTTTCCGCAGGCTTTTTGCCAGCTTTCTCAGTAGC
CAAAGAATTATGTAATAAAAAATATGTGGCAACAGGGCTTAGTTTCATGAATATGATGAATATGGTTGGAATAGCGTTAG
CACAACCTTTAATTGGTTATATTCTGGATAAAATGTGGCAAGGTCAAATGATGGGGACTGTGAGAGTTTATCCATTGGAA
GCTTACTACACTGCTTTGTCAATCCTTCCAATAGGCATGTTAGTTGCGTTACTAATATTACCGAAAATCAAAGAAACCTA
TTGCCAAAGTGTTAATTAA

Upstream 100 bases:

>100_bases
CAAAGATTAGAATATATGGAAATACCATCTATATCCTCTTTTTTGACTAATAACTTTCATAGAATCTAATGATTGGATAA
ATTTGGAGAATTTTTAAATA

Downstream 100 bases:

>100_bases
TGAAATAATACCGCAATTTCAATTTGTAGAATCAAAATGGTTAAAAAATTATATATTAAAACAAATGGCTGCCAAATGAA
TGAATACGATTCTTCTAAAA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MAHYNVQSESLNKASVSLIMPWMVWGLGCLFYFYECLLQVSPSVMSNELMRDFSVTSHTLGILSGIYFYSYAAMQLPGGV
LMDYFGPQRLLTLATVVCAVSTIAFGMTDNFFMACIARLMIGFGSAFAAVGTMKLAANWFPAQKFALLTGLMVTIGMMGA
IGGETPLALLIDNFGWRESMIIMGSVGLLLATLLILIARDTPKNFSPAIHQHPVEEERLIPSLFTLIKNKQLWLVATYGG
LMYMATPVFCGLWGVPFLMNKMLIAKSTAANFISLVFVGWAIASPLWGLFSNRIGLRKPPMYIGCVGAMICSLLFIFAPI
TSSITMEILLFAFGIFSAGFLPAFSVAKELCNKKYVATGLSFMNMMNMVGIALAQPLIGYILDKMWQGQMMGTVRVYPLE
AYYTALSILPIGMLVALLILPKIKETYCQSVN

Sequences:

>Translated_432_residues
MAHYNVQSESLNKASVSLIMPWMVWGLGCLFYFYECLLQVSPSVMSNELMRDFSVTSHTLGILSGIYFYSYAAMQLPGGV
LMDYFGPQRLLTLATVVCAVSTIAFGMTDNFFMACIARLMIGFGSAFAAVGTMKLAANWFPAQKFALLTGLMVTIGMMGA
IGGETPLALLIDNFGWRESMIIMGSVGLLLATLLILIARDTPKNFSPAIHQHPVEEERLIPSLFTLIKNKQLWLVATYGG
LMYMATPVFCGLWGVPFLMNKMLIAKSTAANFISLVFVGWAIASPLWGLFSNRIGLRKPPMYIGCVGAMICSLLFIFAPI
TSSITMEILLFAFGIFSAGFLPAFSVAKELCNKKYVATGLSFMNMMNMVGIALAQPLIGYILDKMWQGQMMGTVRVYPLE
AYYTALSILPIGMLVALLILPKIKETYCQSVN
>Mature_431_residues
AHYNVQSESLNKASVSLIMPWMVWGLGCLFYFYECLLQVSPSVMSNELMRDFSVTSHTLGILSGIYFYSYAAMQLPGGVL
MDYFGPQRLLTLATVVCAVSTIAFGMTDNFFMACIARLMIGFGSAFAAVGTMKLAANWFPAQKFALLTGLMVTIGMMGAI
GGETPLALLIDNFGWRESMIIMGSVGLLLATLLILIARDTPKNFSPAIHQHPVEEERLIPSLFTLIKNKQLWLVATYGGL
MYMATPVFCGLWGVPFLMNKMLIAKSTAANFISLVFVGWAIASPLWGLFSNRIGLRKPPMYIGCVGAMICSLLFIFAPIT
SSITMEILLFAFGIFSAGFLPAFSVAKELCNKKYVATGLSFMNMMNMVGIALAQPLIGYILDKMWQGQMMGTVRVYPLEA
YYTALSILPIGMLVALLILPKIKETYCQSVN

Specific function: Uptake Of D-Galactarate. [C]

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Drosophila melanogaster, GI21356765, Length=370, Percent_Identity=22.1621621621622, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 47433; Mature: 47302

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
7.0 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHYNVQSESLNKASVSLIMPWMVWGLGCLFYFYECLLQVSPSVMSNELMRDFSVTSHTL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
GILSGIYFYSYAAMQLPGGVLMDYFGPQRLLTLATVVCAVSTIAFGMTDNFFMACIARLM
HHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IGFGSAFAAVGTMKLAANWFPAQKFALLTGLMVTIGMMGAIGGETPLALLIDNFGWRESM
HHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCH
IIMGSVGLLLATLLILIARDTPKNFSPAIHQHPVEEERLIPSLFTLIKNKQLWLVATYGG
HEEHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
LMYMATPVFCGLWGVPFLMNKMLIAKSTAANFISLVFVGWAIASPLWGLFSNRIGLRKPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
MYIGCVGAMICSLLFIFAPITSSITMEILLFAFGIFSAGFLPAFSVAKELCNKKYVATGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SFMNMMNMVGIALAQPLIGYILDKMWQGQMMGTVRVYPLEAYYTALSILPIGMLVALLIL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
PKIKETYCQSVN
HHHHHHHHCCCC
>Mature Secondary Structure 
AHYNVQSESLNKASVSLIMPWMVWGLGCLFYFYECLLQVSPSVMSNELMRDFSVTSHTL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
GILSGIYFYSYAAMQLPGGVLMDYFGPQRLLTLATVVCAVSTIAFGMTDNFFMACIARLM
HHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IGFGSAFAAVGTMKLAANWFPAQKFALLTGLMVTIGMMGAIGGETPLALLIDNFGWRESM
HHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCH
IIMGSVGLLLATLLILIARDTPKNFSPAIHQHPVEEERLIPSLFTLIKNKQLWLVATYGG
HEEHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
LMYMATPVFCGLWGVPFLMNKMLIAKSTAANFISLVFVGWAIASPLWGLFSNRIGLRKPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
MYIGCVGAMICSLLFIFAPITSSITMEILLFAFGIFSAGFLPAFSVAKELCNKKYVATGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SFMNMMNMVGIALAQPLIGYILDKMWQGQMMGTVRVYPLEAYYTALSILPIGMLVALLIL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
PKIKETYCQSVN
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]