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The map label for this gene is yomD [H]

Identifier: 52841501

GI number: 52841501

Start: 1397311

End: 1399347

Strand: Reverse

Name: yomD [H]

Synonym: lpg1269

Alternate gene names: 52841501

Gene position: 1399347-1397311 (Counterclockwise)

Preceding gene: 52841502

Following gene: 52841500

Centisome position: 41.18

GC content: 35.69

Gene sequence:

>2037_bases
ATGATTATGTTTTTAGTGTCAATAGAATGCTGGCAAATGTATATCACAAGGGGCTCTTTAATGAATAATTACATCACAAA
GAAAGAGCAAGAAATCACCATGTTTTCAAATAGGGGTTCAGGGCTCAAGCCTAAGACATGCAATCAAAAACTAACATTAC
ATCATGCCCAGGAAGTTGCCAAAAACAAAAATGGGAAGTGTCTTTCAGAAAAGTATAAAAATGTTGATACAAAATTAAAA
TGGGAATGCGAGTTTGGTCATCAATGGGAGGCTACACTTTATAATGTAAGAAAGATCGGATCTTGGTGTCCTGAATGTGC
GGGTGTTGCCAAATTAACACTTGATGAGATGAAACAGCTAGCAGAGAGAAAAAAAGGGAAATGTCTTTCGAATGCTTATA
TTAATTCAGATTCAAAATTGACATGGGAATGCGAATTTGGTCATCAATGGGATGCATTGCCAAACTCGATTAAAAACAAG
AAATCATGGTGCCCCGAATGCGCAGAAAGAAAAAAATTAACTATTAGTCAAATGAAAGAATTAGCTATAAGCAAAGGGGG
GAAATGCTTATCTGCTTCATATAAGAATAATCGTAGTAAATTAAAATGGGAATGTGAATTTGGTCATCAATGGAATGCCT
CGCCATCAAGTATTCTAAATGGTAATTCGTGGTGCCCTGACTGTGCTGGTAATGTAAAACAAACAATAGAAGCAATGAGA
GAATTAGCTAGAAATAGAAATGGCGAATGTTTGTCTGTAGAATATACGAACAGCCACAGTAAATTAACTTGGCAATGTCA
CTTAGGGCATCAATGGGAAGCTACCCCAAGTGATATAAAAAATGGAAAATGGTGTCGTCACTGTTATAAAAGTAAACGTA
AAGGCGAAAATGCGATACGGTGTTTTTTTGAAAAAATATTCAATAAAAAATTCCCTTCCTCAAGACCTTTGTGGCTTATG
TATGAAGGCGGGAGGTTAGAATTAGATGGTTATTGCGAAGAGCTTCAAATAGCTTTTGAGTATCAAGGTCAATACCATTT
CGATAAAACCGCATATTGGTATCCAGATAAAAGTATAAGCTTCGAAAGACGACAGTTAATAGATGAATACAAAAGAAAAA
CATGTGAAGAAAATAAAGTCTTATTAATAGAGATAAATGAACTGAATCCCAGAAGCAATCCTGACAAATGGAAAGATACC
ATAAAGAGAATATTGATATCTAAAGACATTGCAATACCCTCAAATTATGATGCTATCCCTTTTGGTGCTGTTGAGTATCA
TTCCTCAGGTAATTACACGCAGGAAGCCTATGAAATAGCTAAATTAAACCTAGGAATGTGTCATAGTGAAAATATTCTCT
ACAAAGAGCAGCTTGTAGAATGGGAGTGCCATCTAGGCCATCGCTGGTCAGCGAGCTTATCTCAGGTTATTTTAAGAAAT
ACCTGGTGTCCGTCTTGCGCTAGAAGAAAAAAGTTAACTATTAAGCAAATGCAAGCGCTTGCAAAACTCAAAGGTGGGAA
ATGCTTATCTACTGAGTATATAAATGCCAGAACCGAACTTCTATGGGAATGCAGTGAAGGACATCGATGGCTAGCCATAC
CATCTAGTATTAAAAATAATGACTCATGGTGTTTAGAATGCTCTGGTAGTAAAAAACTAACCATAGACAATATGAAAGAA
TTAGCTAAAAAAAGAAATGGGGAATGCTTATCAGATCAATATAATGGAAATAAGGTTAATTTAATTTGGAAGTGTAACTT
AGGTCATATTTGGCAAGCGACTCCATCTAGCATTAAAAATCGTGGTGCATGGTGTCCTGTATGTGGAGGAAGCAATAAAT
TAACAATTGAGCAAATGCAAGAACTGGCAAAACTCAAAGGAGGGAAATGCTTATCTACTGTGTATGTAAATGCTAGAACC
AAGCTTCTATGGGAATGTAGTGCAGGACATCAATGGTTAGCAATCCCAGATAAAATTAAAAATATAGGAAGATGGTGCAA
AGAATGCAAAAAAAGCAAATCAACAATAATTTCTTAA

Upstream 100 bases:

>100_bases
TACATAACATTTCTTAAAAAATATATTGATAAAGGACTAGAGACGTGGGCCCCCATTAACTGGGACGATTTTGTTTTAAA
AATCAACTTAAAATTTTCGG

Downstream 100 bases:

>100_bases
CTTGGAGTTCTCATGAAAGAATTTCTAATGGGTTGCATCCCTGGGATAATCATAATTTTAATCATTGCATTGGTAAACTT
GACTCCCAAACCATCATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 678; Mature: 678

Protein sequence:

>678_residues
MIMFLVSIECWQMYITRGSLMNNYITKKEQEITMFSNRGSGLKPKTCNQKLTLHHAQEVAKNKNGKCLSEKYKNVDTKLK
WECEFGHQWEATLYNVRKIGSWCPECAGVAKLTLDEMKQLAERKKGKCLSNAYINSDSKLTWECEFGHQWDALPNSIKNK
KSWCPECAERKKLTISQMKELAISKGGKCLSASYKNNRSKLKWECEFGHQWNASPSSILNGNSWCPDCAGNVKQTIEAMR
ELARNRNGECLSVEYTNSHSKLTWQCHLGHQWEATPSDIKNGKWCRHCYKSKRKGENAIRCFFEKIFNKKFPSSRPLWLM
YEGGRLELDGYCEELQIAFEYQGQYHFDKTAYWYPDKSISFERRQLIDEYKRKTCEENKVLLIEINELNPRSNPDKWKDT
IKRILISKDIAIPSNYDAIPFGAVEYHSSGNYTQEAYEIAKLNLGMCHSENILYKEQLVEWECHLGHRWSASLSQVILRN
TWCPSCARRKKLTIKQMQALAKLKGGKCLSTEYINARTELLWECSEGHRWLAIPSSIKNNDSWCLECSGSKKLTIDNMKE
LAKKRNGECLSDQYNGNKVNLIWKCNLGHIWQATPSSIKNRGAWCPVCGGSNKLTIEQMQELAKLKGGKCLSTVYVNART
KLLWECSAGHQWLAIPDKIKNIGRWCKECKKSKSTIIS

Sequences:

>Translated_678_residues
MIMFLVSIECWQMYITRGSLMNNYITKKEQEITMFSNRGSGLKPKTCNQKLTLHHAQEVAKNKNGKCLSEKYKNVDTKLK
WECEFGHQWEATLYNVRKIGSWCPECAGVAKLTLDEMKQLAERKKGKCLSNAYINSDSKLTWECEFGHQWDALPNSIKNK
KSWCPECAERKKLTISQMKELAISKGGKCLSASYKNNRSKLKWECEFGHQWNASPSSILNGNSWCPDCAGNVKQTIEAMR
ELARNRNGECLSVEYTNSHSKLTWQCHLGHQWEATPSDIKNGKWCRHCYKSKRKGENAIRCFFEKIFNKKFPSSRPLWLM
YEGGRLELDGYCEELQIAFEYQGQYHFDKTAYWYPDKSISFERRQLIDEYKRKTCEENKVLLIEINELNPRSNPDKWKDT
IKRILISKDIAIPSNYDAIPFGAVEYHSSGNYTQEAYEIAKLNLGMCHSENILYKEQLVEWECHLGHRWSASLSQVILRN
TWCPSCARRKKLTIKQMQALAKLKGGKCLSTEYINARTELLWECSEGHRWLAIPSSIKNNDSWCLECSGSKKLTIDNMKE
LAKKRNGECLSDQYNGNKVNLIWKCNLGHIWQATPSSIKNRGAWCPVCGGSNKLTIEQMQELAKLKGGKCLSTVYVNART
KLLWECSAGHQWLAIPDKIKNIGRWCKECKKSKSTIIS
>Mature_678_residues
MIMFLVSIECWQMYITRGSLMNNYITKKEQEITMFSNRGSGLKPKTCNQKLTLHHAQEVAKNKNGKCLSEKYKNVDTKLK
WECEFGHQWEATLYNVRKIGSWCPECAGVAKLTLDEMKQLAERKKGKCLSNAYINSDSKLTWECEFGHQWDALPNSIKNK
KSWCPECAERKKLTISQMKELAISKGGKCLSASYKNNRSKLKWECEFGHQWNASPSSILNGNSWCPDCAGNVKQTIEAMR
ELARNRNGECLSVEYTNSHSKLTWQCHLGHQWEATPSDIKNGKWCRHCYKSKRKGENAIRCFFEKIFNKKFPSSRPLWLM
YEGGRLELDGYCEELQIAFEYQGQYHFDKTAYWYPDKSISFERRQLIDEYKRKTCEENKVLLIEINELNPRSNPDKWKDT
IKRILISKDIAIPSNYDAIPFGAVEYHSSGNYTQEAYEIAKLNLGMCHSENILYKEQLVEWECHLGHRWSASLSQVILRN
TWCPSCARRKKLTIKQMQALAKLKGGKCLSTEYINARTELLWECSEGHRWLAIPSSIKNNDSWCLECSGSKKLTIDNMKE
LAKKRNGECLSDQYNGNKVNLIWKCNLGHIWQATPSSIKNRGAWCPVCGGSNKLTIEQMQELAKLKGGKCLSTVYVNART
KLLWECSAGHQWLAIPDKIKNIGRWCKECKKSKSTIIS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78295; Mature: 78295

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00867 CPSASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
5.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMFLVSIECWQMYITRGSLMNNYITKKEQEITMFSNRGSGLKPKTCNQKLTLHHAQEVA
CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
KNKNGKCLSEKYKNVDTKLKWECEFGHQWEATLYNVRKIGSWCPECAGVAKLTLDEMKQL
CCCCCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHH
AERKKGKCLSNAYINSDSKLTWECEFGHQWDALPNSIKNKKSWCPECAERKKLTISQMKE
HHHHCCCCHHHHEECCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHH
LAISKGGKCLSASYKNNRSKLKWECEFGHQWNASPSSILNGNSWCPDCAGNVKQTIEAMR
HHHHCCCCEEECCCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHH
ELARNRNGECLSVEYTNSHSKLTWQCHLGHQWEATPSDIKNGKWCRHCYKSKRKGENAIR
HHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHCCCHHHH
CFFEKIFNKKFPSSRPLWLMYEGGRLELDGYCEELQIAFEYQGQYHFDKTAYWYPDKSIS
HHHHHHHHCCCCCCCCEEEEEECCEEEECCCCCEEEEEEEECCEEEECCCEEECCCCCCC
FERRQLIDEYKRKTCEENKVLLIEINELNPRSNPDKWKDTIKRILISKDIAIPSNYDAIP
HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
FGAVEYHSSGNYTQEAYEIAKLNLGMCHSENILYKEQLVEWECHLGHRWSASLSQVILRN
CCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHC
TWCPSCARRKKLTIKQMQALAKLKGGKCLSTEYINARTELLWECSEGHRWLAIPSSIKNN
CCCCHHHHHHCCHHHHHHHHHHHCCCCEECHHHHCCHHHEEEEECCCCEEEEECCCCCCC
DSWCLECSGSKKLTIDNMKELAKKRNGECLSDQYNGNKVNLIWKCNLGHIWQATPSSIKN
CCEEEEECCCCEEEHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCCEECCCCHHHHC
RGAWCPVCGGSNKLTIEQMQELAKLKGGKCLSTVYVNARTKLLWECSAGHQWLAIPDKIK
CCCEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEEEECCEEEEEEECCCCEEEECCHHHH
NIGRWCKECKKSKSTIIS
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIMFLVSIECWQMYITRGSLMNNYITKKEQEITMFSNRGSGLKPKTCNQKLTLHHAQEVA
CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
KNKNGKCLSEKYKNVDTKLKWECEFGHQWEATLYNVRKIGSWCPECAGVAKLTLDEMKQL
CCCCCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHH
AERKKGKCLSNAYINSDSKLTWECEFGHQWDALPNSIKNKKSWCPECAERKKLTISQMKE
HHHHCCCCHHHHEECCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHH
LAISKGGKCLSASYKNNRSKLKWECEFGHQWNASPSSILNGNSWCPDCAGNVKQTIEAMR
HHHHCCCCEEECCCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHH
ELARNRNGECLSVEYTNSHSKLTWQCHLGHQWEATPSDIKNGKWCRHCYKSKRKGENAIR
HHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHCCCHHHH
CFFEKIFNKKFPSSRPLWLMYEGGRLELDGYCEELQIAFEYQGQYHFDKTAYWYPDKSIS
HHHHHHHHCCCCCCCCEEEEEECCEEEECCCCCEEEEEEEECCEEEECCCEEECCCCCCC
FERRQLIDEYKRKTCEENKVLLIEINELNPRSNPDKWKDTIKRILISKDIAIPSNYDAIP
HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
FGAVEYHSSGNYTQEAYEIAKLNLGMCHSENILYKEQLVEWECHLGHRWSASLSQVILRN
CCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHC
TWCPSCARRKKLTIKQMQALAKLKGGKCLSTEYINARTELLWECSEGHRWLAIPSSIKNN
CCCCHHHHHHCCHHHHHHHHHHHCCCCEECHHHHCCHHHEEEEECCCCEEEEECCCCCCC
DSWCLECSGSKKLTIDNMKELAKKRNGECLSDQYNGNKVNLIWKCNLGHIWQATPSSIKN
CCEEEEECCCCEEEHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCCEECCCCHHHHC
RGAWCPVCGGSNKLTIEQMQELAKLKGGKCLSTVYVNARTKLLWECSAGHQWLAIPDKIK
CCCEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEEEECCEEEEEEECCCCEEEECCHHHH
NIGRWCKECKKSKSTIIS
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]