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The map label for this gene is virB6

Identifier: 52841482

GI number: 52841482

Start: 1379832

End: 1380872

Strand: Reverse

Name: virB6

Synonym: lpg1250

Alternate gene names: NA

Gene position: 1380872-1379832 (Counterclockwise)

Preceding gene: 52841483

Following gene: 52841481

Centisome position: 40.64

GC content: 45.05

Gene sequence:

>1041_bases
ATGAGCACACTACAGTTTGATAATTTCATCATCCAGCTTGCCGGTGAAATCGATAAGCTGACCAATCATTTTGTTTTTGA
TGGCTACACGGCACTGGCCTCACTACTTAAAGCCCCATTGGGCGCCATGATTGTTCTATACATCATTTTGAAAGGCTATG
GGATTGCATTGGGTGTTATCGAGCGACCCCAGCAGGAATTGTTTCGATTCAGTATGCGGGCGGGACTTATTTACATGATG
GCCATGAACTGGGATTTGTTTTCGTCTTATATGCGCGATTTGTTTGTATCGGGTAGTGAATCCATCGCAACTCAATTAAT
GCAGGCCGTTCAAAAAAATCCTTCAAGCGGCTCAATCAATCAGGGGTTACAAAATGTATTAAACGAAATCCTCAAATTAG
GTTCGGATTTATTTGAAGCAGGCTCACTTCGAAAACTCACACCTTATTTTGCAGGCATGATGGTGTTTTTATCGGGGAGC
GTCACGATAGGTCTTGCCTTTATTGAAATCGTCATCGCCAAACTGATGTTAGCCGTGACCTTGTGCACTACACCTCTGTT
CATCCTGTTTACCTTGTTTGACCAAACCAAATCTTTTTTTGACCGGTGGCTTGGCGTGCTCGCCGGATTTGCCTTTGTGC
TTATTTTTGTATCCAGTGTGGTAGGCCTTTGCATCCACTTATTGCATTGGGTGACTTATGCTTTTTTGGGCAATACGGAT
GAGCTAACTGCGGCCATTTGGGTGCCGATTTTTATCGTGGCCTGTTTATGTGTCATGGGCATCACCCAAGCCGTGGCTAT
TGGTAAAAGCATTGGTGGTTCGGTTTGCACATCAGCAGGTTCAGCCATGGTGGGAGGCTTTATTGGTGGAGGCTTAGGGG
CATGGGGATTTTCCAAGTCTTCCGTTCAAAAACCAATAAATACGCTGACTCAAGGATTAGGAGGCGCATCGCGTCTCGTG
GAAAAAGGCAAACAACTGGGTACAGCCAGTCATAACGTATTCAAACAACTGCATAAAAACCTGCGAAGAGGAGCATCATG
A

Upstream 100 bases:

>100_bases
GGATGATTTAACAGACCACGGTCTTTTTGAAACTCTGGCAGATACCTATGCCGAAACAGCAGCCACCATTTGGCCTCACT
TTGTTTCGAGAACCTAAATC

Downstream 100 bases:

>100_bases
GTAAAACCAATTGGAATGATTATTTTAAGCGTGCTCGAAGTTGGGCAGACGACCAGTTTGGCCGAATCGAACAATCGCGA
AACCGCTATCAAGCCGCATT

Product: LvhB6

Products: NA

Alternate protein names: Type IV Secretion; VblB6 Protein; Type IV Secretory Pathway Component; Type IV Secretory Pathway VirB6 Components; VirB6 Type IV Secretion Protein; Conjugal Transfer Protein; Type IV Secretory Pathway AvhB6 Protein

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MSTLQFDNFIIQLAGEIDKLTNHFVFDGYTALASLLKAPLGAMIVLYIILKGYGIALGVIERPQQELFRFSMRAGLIYMM
AMNWDLFSSYMRDLFVSGSESIATQLMQAVQKNPSSGSINQGLQNVLNEILKLGSDLFEAGSLRKLTPYFAGMMVFLSGS
VTIGLAFIEIVIAKLMLAVTLCTTPLFILFTLFDQTKSFFDRWLGVLAGFAFVLIFVSSVVGLCIHLLHWVTYAFLGNTD
ELTAAIWVPIFIVACLCVMGITQAVAIGKSIGGSVCTSAGSAMVGGFIGGGLGAWGFSKSSVQKPINTLTQGLGGASRLV
EKGKQLGTASHNVFKQLHKNLRRGAS

Sequences:

>Translated_346_residues
MSTLQFDNFIIQLAGEIDKLTNHFVFDGYTALASLLKAPLGAMIVLYIILKGYGIALGVIERPQQELFRFSMRAGLIYMM
AMNWDLFSSYMRDLFVSGSESIATQLMQAVQKNPSSGSINQGLQNVLNEILKLGSDLFEAGSLRKLTPYFAGMMVFLSGS
VTIGLAFIEIVIAKLMLAVTLCTTPLFILFTLFDQTKSFFDRWLGVLAGFAFVLIFVSSVVGLCIHLLHWVTYAFLGNTD
ELTAAIWVPIFIVACLCVMGITQAVAIGKSIGGSVCTSAGSAMVGGFIGGGLGAWGFSKSSVQKPINTLTQGLGGASRLV
EKGKQLGTASHNVFKQLHKNLRRGAS
>Mature_345_residues
STLQFDNFIIQLAGEIDKLTNHFVFDGYTALASLLKAPLGAMIVLYIILKGYGIALGVIERPQQELFRFSMRAGLIYMMA
MNWDLFSSYMRDLFVSGSESIATQLMQAVQKNPSSGSINQGLQNVLNEILKLGSDLFEAGSLRKLTPYFAGMMVFLSGSV
TIGLAFIEIVIAKLMLAVTLCTTPLFILFTLFDQTKSFFDRWLGVLAGFAFVLIFVSSVVGLCIHLLHWVTYAFLGNTDE
LTAAIWVPIFIVACLCVMGITQAVAIGKSIGGSVCTSAGSAMVGGFIGGGLGAWGFSKSSVQKPINTLTQGLGGASRLVE
KGKQLGTASHNVFKQLHKNLRRGAS

Specific function: Unknown

COG id: COG3704

COG function: function code U; Type IV secretory pathway, VirB6 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37332; Mature: 37200

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STLQFDNFIIQLAGEIDKLTNHFVFDGYTALASLLKAPLGAMIVLYIILKGYGIALGVI
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA