Click here to switch to the map view.

The map label for this gene is ycgS [H]

Identifier: 52841409

GI number: 52841409

Start: 1300274

End: 1301209

Strand: Reverse

Name: ycgS [H]

Synonym: lpg1175

Alternate gene names: 52841409

Gene position: 1301209-1300274 (Counterclockwise)

Preceding gene: 52841410

Following gene: 52841403

Centisome position: 38.3

GC content: 40.71

Gene sequence:

>936_bases
ATGAATGAAATTCAAGAATTCTTGCGTCAAAAACTGAATTCGCCGTTACCTATTTCACGACCTCAATTGGCAAAGCTACC
AATGGGTACTATGGAGTTTGTTACTTATGGTAATGGAAAACCCGTACTGATTATTCATGGTGGAGGGGGTGGTTATGATC
AGGCAGTGCTTTTATTCAAACGCTATATCCCTGATGGTTACCAAATGATTTGTCCTTCTCGTCCCGGTTATTTGGGAACA
CCCATTGATACTGGACAAACAGCAGAAGAACAGGCAGATGCCCTGGCCGGCTTACTGGATTATTTGAATATTACCAGCGC
AGTTATTGTAGCCATATCAGCTGGAGGGCTTTCTCTGTATCCTTTTGCCATTCGCCACCCGAAAAAAACTAAAGCAATCA
TTGCAATAGATGCTATAGCTGGAGAATATTTAATGCCTGAACAATCCAACAAATTGGCTCAAGCCCTTTTTATGACTGAT
TTTGGTTTATGGGTCGCTAAAAAAAGCATGATTTATTTCCCCAAGTCATTTATCAAGAATTTAATTAAACTGGAAGGTTA
CCTGGATCCAGTACGTGTAGATGACCGGGTGAAAGAGATCTTAAATTGTCGGGAGCGCCTGGAAATCATTGCTGAACTAA
TGAATAGCATGGCGGACTATAAGGCCCGTAAAACAGGGACCGTGAATGACATGGCAGAGGGTGTAAAAACCAGCTGGTAT
GATTTTTCTAAAATTAACTGCCCTGCACTAATAATTCATGGGACACATGATGCTGATGTAAAATTTTACAATGGTGTATT
TGCTTATGAGCGATTAGCATCGAAAGAAAAAGAGCGCTTCTGGATTGAATACGGCACTCATTTGGGGTTTTTCTTTGCTC
ATCAGGCGCGTGAGGTGCAACAAAAATTCCAGGAATTTATAATAAAGCATGGTTAA

Upstream 100 bases:

>100_bases
CAAAAAGGTCTTTTCATAAATAATTTTCGATATTTTCAGTAGACAAGATCATCTAAAAAGCCAAGTATTAATTTGCTTTC
ACTTTGGATAGGGAGTTGCC

Downstream 100 bases:

>100_bases
ACAGTTTCTTGTTGAAAAGTTCATGGCGGCAGAATAAACAACTTCTAAATCTATCTACTAAATAACGTGAGTTATAGATA
AAGAGGATATAAAAACCAGT

Product: alpha/beta fold family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNEIQEFLRQKLNSPLPISRPQLAKLPMGTMEFVTYGNGKPVLIIHGGGGGYDQAVLLFKRYIPDGYQMICPSRPGYLGT
PIDTGQTAEEQADALAGLLDYLNITSAVIVAISAGGLSLYPFAIRHPKKTKAIIAIDAIAGEYLMPEQSNKLAQALFMTD
FGLWVAKKSMIYFPKSFIKNLIKLEGYLDPVRVDDRVKEILNCRERLEIIAELMNSMADYKARKTGTVNDMAEGVKTSWY
DFSKINCPALIIHGTHDADVKFYNGVFAYERLASKEKERFWIEYGTHLGFFFAHQAREVQQKFQEFIIKHG

Sequences:

>Translated_311_residues
MNEIQEFLRQKLNSPLPISRPQLAKLPMGTMEFVTYGNGKPVLIIHGGGGGYDQAVLLFKRYIPDGYQMICPSRPGYLGT
PIDTGQTAEEQADALAGLLDYLNITSAVIVAISAGGLSLYPFAIRHPKKTKAIIAIDAIAGEYLMPEQSNKLAQALFMTD
FGLWVAKKSMIYFPKSFIKNLIKLEGYLDPVRVDDRVKEILNCRERLEIIAELMNSMADYKARKTGTVNDMAEGVKTSWY
DFSKINCPALIIHGTHDADVKFYNGVFAYERLASKEKERFWIEYGTHLGFFFAHQAREVQQKFQEFIIKHG
>Mature_311_residues
MNEIQEFLRQKLNSPLPISRPQLAKLPMGTMEFVTYGNGKPVLIIHGGGGGYDQAVLLFKRYIPDGYQMICPSRPGYLGT
PIDTGQTAEEQADALAGLLDYLNITSAVIVAISAGGLSLYPFAIRHPKKTKAIIAIDAIAGEYLMPEQSNKLAQALFMTD
FGLWVAKKSMIYFPKSFIKNLIKLEGYLDPVRVDDRVKEILNCRERLEIIAELMNSMADYKARKTGTVNDMAEGVKTSWY
DFSKINCPALIIHGTHDADVKFYNGVFAYERLASKEKERFWIEYGTHLGFFFAHQAREVQQKFQEFIIKHG

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 35047; Mature: 35047

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIQEFLRQKLNSPLPISRPQLAKLPMGTMEFVTYGNGKPVLIIHGGGGGYDQAVLLFK
CCHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHH
RYIPDGYQMICPSRPGYLGTPIDTGQTAEEQADALAGLLDYLNITSAVIVAISAGGLSLY
HHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEC
PFAIRHPKKTKAIIAIDAIAGEYLMPEQSNKLAQALFMTDFGLWVAKKSMIYFPKSFIKN
HHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHH
LIKLEGYLDPVRVDDRVKEILNCRERLEIIAELMNSMADYKARKTGTVNDMAEGVKTSWY
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
DFSKINCPALIIHGTHDADVKFYNGVFAYERLASKEKERFWIEYGTHLGFFFAHQAREVQ
CCCCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHH
QKFQEFIIKHG
HHHHHHHHCCC
>Mature Secondary Structure
MNEIQEFLRQKLNSPLPISRPQLAKLPMGTMEFVTYGNGKPVLIIHGGGGGYDQAVLLFK
CCHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHH
RYIPDGYQMICPSRPGYLGTPIDTGQTAEEQADALAGLLDYLNITSAVIVAISAGGLSLY
HHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEC
PFAIRHPKKTKAIIAIDAIAGEYLMPEQSNKLAQALFMTDFGLWVAKKSMIYFPKSFIKN
HHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHH
LIKLEGYLDPVRVDDRVKEILNCRERLEIIAELMNSMADYKARKTGTVNDMAEGVKTSWY
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
DFSKINCPALIIHGTHDADVKFYNGVFAYERLASKEKERFWIEYGTHLGFFFAHQAREVQ
CCCCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHH
QKFQEFIIKHG
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]