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The map label for this gene is 52840870

Identifier: 52840870

GI number: 52840870

Start: 669522

End: 670427

Strand: Reverse

Name: 52840870

Synonym: lpg0633

Alternate gene names: NA

Gene position: 670427-669522 (Counterclockwise)

Preceding gene: 52840871

Following gene: 52840869

Centisome position: 19.73

GC content: 34.99

Gene sequence:

>906_bases
GTGACAATATTTTTCTCAATTGACCTTACACATATTAAATTTCGAATGAAAATCAAGACTGTTACGAGATACTTACTGCT
TTTCTCAATATTTTTCCTGATAGGATTTAACAACGTATTTGCTCAAAAAAAAGCCATAGCAATCACTATTGATGATTTGC
CCTTTGTTGGTGAATACCGAAACTTTCATCTGAATATGATGATGAATACAATGAAAGACGAAAAAATCCCGGCAACAGGT
TTTATCATTGCCAAAGAAGTCAGGCCTGATAATTGGGAAATACTTCATAAATTTCGTGAAGCAGGTTTCGGCTTGGGCAA
CCATACTTTTTCTCATGCCAATTTAAACAAACTCAAAGCGAAAGAATATATACAGGAAATTAAAGAAGCAGATTCACTTT
TAATGCCCGTCCTCACTGAACCCAAGTATTTTCGTTATCCCTATTTGGCAATGAGTTCTGGAAGTAAAAAAAATAAAATC
CTCTGCTACCTTGAAAAACACCACTATCAAGTTGCCCCGATTACCATTGACAGCAAAGATTTTGTCTTTAATCAACGCTT
ATTATCTGTGCCTGAATTAGGAAGGAGAGCTTACCTGGATGAGTTGAAGCCATTTTATCTGGATTTTATCTGGCAACAAA
CGTTAAAAGCTGAAGAGCATACGCAATATCACCATAATCCAGATCAAGCACAAATCCTGTTAATCCATGCTAACTTACTT
AATGCCTATGTCCTGCCTGATATTATTAATTTATACAAACAAAATGGTTACACGTTTGTGAGTCTGGAAGATGCCTTAAA
AACATTCAAAGAAAACTATCATTGTCATAAAACCAGAATCCTTACAAAAAAACCTGCCGGAGAGGAAACGGATTTAAACA
TAGAATCATTTATGGATTGGGATTAA

Upstream 100 bases:

>100_bases
CATAAACAGTCTTATTTTCAAAATAAGGCTGTTTATTTCGTATTTCTTATTTTAATAAGCTCTTAAATATAAGCTATTCA
TCGTAATTTTTGTTACAATA

Downstream 100 bases:

>100_bases
TAAGCACCATGAAGCCTTCAGACTGTAAAATTTTTTTGCCAGACCAATGTTTCTGGCCCCTATATAATTCTCTCTATACA
ACCTTGCTAACCGGACTATC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Polysaccharide Deacetylase-Related Protein; Polysaccharide Deacetylase Family Protein; Polysaccharide Deacetylase Domain Protein; Peptidoglycan GlcNAc Deacetylase Proteins; Polysaccharide Deacetylase Family

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MTIFFSIDLTHIKFRMKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYRNFHLNMMMNTMKDEKIPATG
FIIAKEVRPDNWEILHKFREAGFGLGNHTFSHANLNKLKAKEYIQEIKEADSLLMPVLTEPKYFRYPYLAMSSGSKKNKI
LCYLEKHHYQVAPITIDSKDFVFNQRLLSVPELGRRAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLL
NAYVLPDIINLYKQNGYTFVSLEDALKTFKENYHCHKTRILTKKPAGEETDLNIESFMDWD

Sequences:

>Translated_301_residues
MTIFFSIDLTHIKFRMKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYRNFHLNMMMNTMKDEKIPATG
FIIAKEVRPDNWEILHKFREAGFGLGNHTFSHANLNKLKAKEYIQEIKEADSLLMPVLTEPKYFRYPYLAMSSGSKKNKI
LCYLEKHHYQVAPITIDSKDFVFNQRLLSVPELGRRAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLL
NAYVLPDIINLYKQNGYTFVSLEDALKTFKENYHCHKTRILTKKPAGEETDLNIESFMDWD
>Mature_300_residues
TIFFSIDLTHIKFRMKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYRNFHLNMMMNTMKDEKIPATGF
IIAKEVRPDNWEILHKFREAGFGLGNHTFSHANLNKLKAKEYIQEIKEADSLLMPVLTEPKYFRYPYLAMSSGSKKNKIL
CYLEKHHYQVAPITIDSKDFVFNQRLLSVPELGRRAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLLN
AYVLPDIINLYKQNGYTFVSLEDALKTFKENYHCHKTRILTKKPAGEETDLNIESFMDWD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35445; Mature: 35313

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFFSIDLTHIKFRMKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYR
CEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCCCC
NFHLNMMMNTMKDEKIPATGFIIAKEVRPDNWEILHKFREAGFGLGNHTFSHANLNKLKA
CEEEEEHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHH
KEYIQEIKEADSLLMPVLTEPKYFRYPYLAMSSGSKKNKILCYLEKHHYQVAPITIDSKD
HHHHHHHHHHHHHHHHHHCCCCCEECCEEEECCCCCCCCEEEEEECCCEEEEEEEECCCC
FVFNQRLLSVPELGRRAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECHH
NAYVLPDIINLYKQNGYTFVSLEDALKTFKENYHCHKTRILTKKPAGEETDLNIESFMDW
HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCEEHEEEEECCCCCCCCCCCHHHCCCC
D
C
>Mature Secondary Structure 
TIFFSIDLTHIKFRMKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYR
EEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCCCC
NFHLNMMMNTMKDEKIPATGFIIAKEVRPDNWEILHKFREAGFGLGNHTFSHANLNKLKA
CEEEEEHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHH
KEYIQEIKEADSLLMPVLTEPKYFRYPYLAMSSGSKKNKILCYLEKHHYQVAPITIDSKD
HHHHHHHHHHHHHHHHHHCCCCCEECCEEEECCCCCCCCEEEEEECCCEEEEEEEECCCC
FVFNQRLLSVPELGRRAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECHH
NAYVLPDIINLYKQNGYTFVSLEDALKTFKENYHCHKTRILTKKPAGEETDLNIESFMDW
HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCEEHEEEEECCCCCCCCCCCHHHCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA