Click here to switch to the map view.

The map label for this gene is 52840869

Identifier: 52840869

GI number: 52840869

Start: 668593

End: 669300

Strand: Reverse

Name: 52840869

Synonym: lpg0632

Alternate gene names: NA

Gene position: 669300-668593 (Counterclockwise)

Preceding gene: 52840870

Following gene: 52840868

Centisome position: 19.7

GC content: 43.79

Gene sequence:

>708_bases
TTGAACAAAGTGATAACGGAATCACAAAAATTCACTCTGCGCAACATAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
GTTGCCCGCACAATCTAATATAGCACAAAAGATACAAACACAAGGCATAATGTACAATGATCTTTGTAAAGACAGCTTCG
ATACTGAGGCCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAGCCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGCCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCCGGAACAACACCCGGCCAAGCAGTCTGGAATAATGGAGCTTTGAACTGCCCTTAA

Upstream 100 bases:

>100_bases
TGGACCAAGCATTTGCTAGCCAATTATTTGTAAAAAATTTAACTAATTTGAACTATAATTAACAATGTAGTGGGTTCGAT
CAAACAATAGGGATAATGCT

Downstream 100 bases:

>100_bases
CGGAGATAGAATATGATTAACCGAATGGATACATTAGCAAAAGACAAGGGAATGACTTTGCTGGAAGTGTTGATATCTGT
AGTCATATTAGCCGTTGGCA

Product: type IV pre-pilin

Products: NA

Alternate protein names: Type-4 Fimbrial Pilin Related Signal Peptide Protein; Fimbrial Pilin Related Signal Peptide Protein; Methylation Site Containing Protein; Prokaryotic N-Terminal Methylation Motif Domain Protein; Type IV Pre-Pilin; Type IV Prepilin; Type IV Fimbrial Fimt-Related Pilin; Tfp Pilus Assembly Protein FimT; Methylation

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNKVITESQKFTLRNIANMLFCVESSVLPAQSNIAQKIQTQGIMYNDLCKDSFDTEAPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP

Sequences:

>Translated_235_residues
MNKVITESQKFTLRNIANMLFCVESSVLPAQSNIAQKIQTQGIMYNDLCKDSFDTEAPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP
>Mature_235_residues
MNKVITESQKFTLRNIANMLFCVESSVLPAQSNIAQKIQTQGIMYNDLCKDSFDTEAPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP

Specific function: Unknown

COG id: COG4970

COG function: function code NU; Tfp pilus assembly protein FimT

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24869; Mature: 24869

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVITESQKFTLRNIANMLFCVESSVLPAQSNIAQKIQTQGIMYNDLCKDSFDTEAPLN
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCC
SNPLSIAGFTLVELLVTLSVFAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTLLKSHQTSVNDPVITSNVSSV
HHCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEECCCCEE
VFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP
EECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MNKVITESQKFTLRNIANMLFCVESSVLPAQSNIAQKIQTQGIMYNDLCKDSFDTEAPLN
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCC
SNPLSIAGFTLVELLVTLSVFAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTLLKSHQTSVNDPVITSNVSSV
HHCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEECCCCEE
VFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP
EECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA