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The map label for this gene is ydjX [C]

Identifier: 52840833

GI number: 52840833

Start: 627276

End: 627971

Strand: Reverse

Name: ydjX [C]

Synonym: lpg0596

Alternate gene names: 52840833

Gene position: 627971-627276 (Counterclockwise)

Preceding gene: 52840836

Following gene: 52840830

Centisome position: 18.48

GC content: 38.36

Gene sequence:

>696_bases
TTGAGAGAAGGCTTGCGAGTCCTTAATTCCTGTAATAAAGTGAGGGGCATCTTTACTTTAACACAAAAAACCATTAAGAC
ATTCTGTTTCATTTTAGCCATATTAGTTTTAATTATTTTCGCAGTGGTCTTTCATAATCATTCGTTAGAGATCATTGATT
ATATAGACGATCTGGGTTGGCTTGCCCCTGTTCTTTTCTTGATCACCTACTGCCTCGCGACTTTATTGCTTTTACCCACA
ATGGTATTAACTCTGGCTGGAGGAGCTGTGTTTGGGCCTGTATTTGGTACCTTGCTTAATTTATTGGGCGCCACTAGCGG
CGCTGCGTTGGCATTTCTGATAACAAGACACCTGGTTTACGATTGGTTCTCAACCAAAAAGGGTGAAAAACTAAACAAAT
TGATTGCCGGGGTAGATGAGAAAGGTTGGGTTTTTGTGGCTTTCTTGCGATTGTTTCCAATAGTCCCTTTTAACCTGGTC
AACTATGGCTTAGGAGTAACTGGCATATCATTTCGTCTTTATTTGCTAACTACTTTTATTTTTCTAATTCCTGCAGAAAT
TATTTATACCTATTTTGGATACGTCGGCATGGATGCTCTGACAAGGCCAGGCCATTTATATAGGAATGGTGGAATTTTTC
TAACTGGATTAGCGATTTTCTTTTTACTTGTTATCAGAATAATGAAAAAAAGATAG

Upstream 100 bases:

>100_bases
TCAAAACGATTTGAATAGATAGGTTTATGAATCATGTTGATTTCATTTAAAAAATTTAAGCGAAAGCAACATCTGTTTTT
ATGATAATTTACCCGGAATA

Downstream 100 bases:

>100_bases
TTGTTTTTTCAATTAATAAAAATTTATCAAGACTCATCCTGATTTAATAAAAAGATCAACTTATCGATAATTGGATGATT
GACTTCAAAAATAATGTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MREGLRVLNSCNKVRGIFTLTQKTIKTFCFILAILVLIIFAVVFHNHSLEIIDYIDDLGWLAPVLFLITYCLATLLLLPT
MVLTLAGGAVFGPVFGTLLNLLGATSGAALAFLITRHLVYDWFSTKKGEKLNKLIAGVDEKGWVFVAFLRLFPIVPFNLV
NYGLGVTGISFRLYLLTTFIFLIPAEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR

Sequences:

>Translated_231_residues
MREGLRVLNSCNKVRGIFTLTQKTIKTFCFILAILVLIIFAVVFHNHSLEIIDYIDDLGWLAPVLFLITYCLATLLLLPT
MVLTLAGGAVFGPVFGTLLNLLGATSGAALAFLITRHLVYDWFSTKKGEKLNKLIAGVDEKGWVFVAFLRLFPIVPFNLV
NYGLGVTGISFRLYLLTTFIFLIPAEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR
>Mature_231_residues
MREGLRVLNSCNKVRGIFTLTQKTIKTFCFILAILVLIIFAVVFHNHSLEIIDYIDDLGWLAPVLFLITYCLATLLLLPT
MVLTLAGGAVFGPVFGTLLNLLGATSGAALAFLITRHLVYDWFSTKKGEKLNKLIAGVDEKGWVFVAFLRLFPIVPFNLV
NYGLGVTGISFRLYLLTTFIFLIPAEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI87081964, Length=177, Percent_Identity=33.8983050847458, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788049, Length=184, Percent_Identity=30.9782608695652, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25853; Mature: 25853

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREGLRVLNSCNKVRGIFTLTQKTIKTFCFILAILVLIIFAVVFHNHSLEIIDYIDDLGW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LAPVLFLITYCLATLLLLPTMVLTLAGGAVFGPVFGTLLNLLGATSGAALAFLITRHLVY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DWFSTKKGEKLNKLIAGVDEKGWVFVAFLRLFPIVPFNLVNYGLGVTGISFRLYLLTTFI
HHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHH
FLIPAEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR
HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MREGLRVLNSCNKVRGIFTLTQKTIKTFCFILAILVLIIFAVVFHNHSLEIIDYIDDLGW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LAPVLFLITYCLATLLLLPTMVLTLAGGAVFGPVFGTLLNLLGATSGAALAFLITRHLVY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DWFSTKKGEKLNKLIAGVDEKGWVFVAFLRLFPIVPFNLVNYGLGVTGISFRLYLLTTFI
HHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHH
FLIPAEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR
HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]