Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 52840632

GI number: 52840632

Start: 430045

End: 430818

Strand: Reverse

Name: yadH [H]

Synonym: lpg0387

Alternate gene names: 52840632

Gene position: 430818-430045 (Counterclockwise)

Preceding gene: 52840633

Following gene: 52840628

Centisome position: 12.68

GC content: 37.6

Gene sequence:

>774_bases
ATGGGATTTAAATATCAACTTATTGCCCTTTATACCCTGGTAAGACGTGAAGTGGTTCGTATGTTTCGCATTTCGAGTCA
AGTATTTTTGCCGCCAGTAATCACCACAACGTTATATTTTCTAATTTTTGGAAGTTTAATTGGACCTCGTATTGGAGATA
TTGAGGGCGTGGATTATTCACAATTCATAGCACCCGGATTAATTATGATGTCCGTTATTATTAATTCCTATGGAAACGTC
TCTAATTCACTATTCAGCGTAAGATTTCAAAAAAGTATAGAGGAAATGCTGATTAGTCCCATGCATAATGGACTTTTATT
GTTAGGTTATGTGATAGGAGGCGTGCTGAGAGGATTGATCGTCGCAATTCTGGTTTTTGTTATCTCTACCTTTTTTCTGC
CTGTTGAATTAGATCATTTACCAATGACCCTTCTAGTTGTCGTGCTTGTTGCAGCCATATTCTCACTGGCTGGATTTACC
AATGCCATGGTCGCTCGAAATTTTGATGACATCATGCTGATACCCACCTTTATCCTGACCCCTCTTACTTACTTGGGAGG
AGTCTTTTACAGTATTAATATGCTGCCCCCCTTTTGGCAAAAAATCTCTCTTTTCAATCCAATTTTATACATGGTAAACG
CTTTAAGACACACCATGATCGATCAGGAAGAAGTTAGTATTACTCTGGCTATGATTATTATTTTCCTGATGTTAATTGCT
TTGACAGTAGGGAATATGATTCTTTTAAAAAAAGGGGTGGGATTTCGCGAATAA

Upstream 100 bases:

>100_bases
AATGAAGTATTCTCTGTATTAACAAAACAGGGAATAAAGATTCACAGCATGCGCAATAAAACCAACCGATTAGAAGAACT
TTTTATGGATCTGATTAAAA

Downstream 100 bases:

>100_bases
AAAACAGGATTCCCTGCAAAACGGATCTATTTGCGTTTAAAACCCAATGCTTCCAGGCGCTGTTCAATACTAGGGTGAGT
TGAAAAGGCATTATTTAGCG

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MGFKYQLIALYTLVRREVVRMFRISSQVFLPPVITTTLYFLIFGSLIGPRIGDIEGVDYSQFIAPGLIMMSVIINSYGNV
SNSLFSVRFQKSIEEMLISPMHNGLLLLGYVIGGVLRGLIVAILVFVISTFFLPVELDHLPMTLLVVVLVAAIFSLAGFT
NAMVARNFDDIMLIPTFILTPLTYLGGVFYSINMLPPFWQKISLFNPILYMVNALRHTMIDQEEVSITLAMIIIFLMLIA
LTVGNMILLKKGVGFRE

Sequences:

>Translated_257_residues
MGFKYQLIALYTLVRREVVRMFRISSQVFLPPVITTTLYFLIFGSLIGPRIGDIEGVDYSQFIAPGLIMMSVIINSYGNV
SNSLFSVRFQKSIEEMLISPMHNGLLLLGYVIGGVLRGLIVAILVFVISTFFLPVELDHLPMTLLVVVLVAAIFSLAGFT
NAMVARNFDDIMLIPTFILTPLTYLGGVFYSINMLPPFWQKISLFNPILYMVNALRHTMIDQEEVSITLAMIIIFLMLIA
LTVGNMILLKKGVGFRE
>Mature_256_residues
GFKYQLIALYTLVRREVVRMFRISSQVFLPPVITTTLYFLIFGSLIGPRIGDIEGVDYSQFIAPGLIMMSVIINSYGNVS
NSLFSVRFQKSIEEMLISPMHNGLLLLGYVIGGVLRGLIVAILVFVISTFFLPVELDHLPMTLLVVVLVAAIFSLAGFTN
AMVARNFDDIMLIPTFILTPLTYLGGVFYSINMLPPFWQKISLFNPILYMVNALRHTMIDQEEVSITLAMIIIFLMLIAL
TVGNMILLKKGVGFRE

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=250, Percent_Identity=48.8, Blast_Score=248, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28800; Mature: 28669

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKYQLIALYTLVRREVVRMFRISSQVFLPPVITTTLYFLIFGSLIGPRIGDIEGVDYS
CCCHHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
QFIAPGLIMMSVIINSYGNVSNSLFSVRFQKSIEEMLISPMHNGLLLLGYVIGGVLRGLI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
VAILVFVISTFFLPVELDHLPMTLLVVVLVAAIFSLAGFTNAMVARNFDDIMLIPTFILT
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
PLTYLGGVFYSINMLPPFWQKISLFNPILYMVNALRHTMIDQEEVSITLAMIIIFLMLIA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LTVGNMILLKKGVGFRE
HHHCCHHEEECCCCCCC
>Mature Secondary Structure 
GFKYQLIALYTLVRREVVRMFRISSQVFLPPVITTTLYFLIFGSLIGPRIGDIEGVDYS
CCHHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
QFIAPGLIMMSVIINSYGNVSNSLFSVRFQKSIEEMLISPMHNGLLLLGYVIGGVLRGLI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
VAILVFVISTFFLPVELDHLPMTLLVVVLVAAIFSLAGFTNAMVARNFDDIMLIPTFILT
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
PLTYLGGVFYSINMLPPFWQKISLFNPILYMVNALRHTMIDQEEVSITLAMIIIFLMLIA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LTVGNMILLKKGVGFRE
HHHCCHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]