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The map label for this gene is 52840504

Identifier: 52840504

GI number: 52840504

Start: 295512

End: 296666

Strand: Reverse

Name: 52840504

Synonym: lpg0249

Alternate gene names: NA

Gene position: 296666-295512 (Counterclockwise)

Preceding gene: 52840505

Following gene: 52840500

Centisome position: 8.73

GC content: 39.22

Gene sequence:

>1155_bases
ATGATGTTTGGTTTTTTAAATATGACTTTATGGGGATATCTTTTGGCCGGTTTTGTCCTGACTCACATCACCACCACTGC
TGTTACCATTTACTTACATCGTTATCAAACACACCGCGCATTAACTCTGCATCCTCTTGTAAGCCATTTTTTCCGCTTCT
GGCTTTGGTTAACGACCGGGATGACCACGGCAGAATGGGTAGCCATTCATCGGAAACATCATGCCAATACTGACATGGAA
GGGGATCCACATAGCCCTCAGGTATTTACTTTAAAAAAAGTATTTTGGCAAGTTCCAGAATTATATCGAGAGGCCTCTAA
AGATAAAGACATGATTAAAAAATACTCCTCGGGCACTCCAAACGACTGGATAGAGCGCAAATTATATTCTCCCCATGCGA
ACAAAGGCATATTTTTAATGCTCACACTTAATCTTTTCTTGTTTGGAATTCCTGGACTTACCCTTTGGGCAATCCAAATG
ATGTGGATACCTCTTGTTGCTGGCGTGGTCAATGGAATAGGGCACTATTGGGGTTATCGCAATCATGAGTCGTCAGATTC
TTCAACCAATGTTTTTCCCTGGGGTTTATTGATTGCTGGTGAAGAATTGCATAATAATCATCATACCTTCGCCTCCTCAG
CCAAATTTTCCATTAAATGGTGGGAATTTGATTTGGGTTGGTTTTACATACGTTGTTTGTCTTTTTTAAAGCTTGCCAAA
GTAAAAAAATTACCCCCAAAACTGATCATTGACAAGAATAAATCTCATATAGATGTAGATTCGGTAAAAGCGATACTTGG
TAATCGCTTTCAAGTGATATCTGATTATTACAAGCTGGTTATATTTCCTACTCTGCGCGATATGCAATACCGCATAAAAA
ATCGGGATTTAAAGAATGCTCGCCATTTATTCAAGAAACCGAACGAACAGCTATCCCATGCTGATCAGTTGCGATTGAAA
ACATTACTTAAGCAACATGACAACTTGCAAGCGGTTCATAATTACCGCGAATTATTACAGCAGATATGGTTAAAAACGTC
CCTATCCAATAAGGATCTTCTTAATTTAATACAAAAATGGTGTAGCCAGGCCGAAGAATCCGGGCTGCATGTGTTAAGGC
AATTTGCATCACAATTAAAAAGCTATTCTCTCTGA

Upstream 100 bases:

>100_bases
GCCACTAAGATAAAAATAAATAGTGTATACTTAGTGGATATAAAGATATTCTTACATATCGTTTTGCCAATTACACAATT
TCAGGCACCTAAGAGGAGGA

Downstream 100 bases:

>100_bases
AGTTTTGCAAATGCTTTTATTCCTTACCATGACAGTGAGATTAGTCATGGTATCAGGATTAAATTTATATTATCGTACAA
TAAAGATTAATCAAACAGCT

Product: stearoyl CoA 9-desaturase

Products: NA

Alternate protein names: Stearoyl-CoA 9-Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Fatty Acid Desaturase Subfamily; Fatty Acid Desaturase Family Protein; Stearoyl-CoA Desaturase; Acyl-CoA Desaturase; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Delta-9 Acyl-Lipid Desaturase; Transmembrane Fatty Acid Desaturase; Fatty Acid Desaturase Family; Stearoyl-CoA Desaturase Oxidoreductase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Desaturase-Like; Stearoyl-CoA-9-Desaturase; Delta 9 Acyl-Lipid Desaturase; Fatty Acid Desaturase Family Proteiin; Stearoyl-CoA Desaturase Oxidoreductase Protein

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MMFGFLNMTLWGYLLAGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTGMTTAEWVAIHRKHHANTDME
GDPHSPQVFTLKKVFWQVPELYREASKDKDMIKKYSSGTPNDWIERKLYSPHANKGIFLMLTLNLFLFGIPGLTLWAIQM
MWIPLVAGVVNGIGHYWGYRNHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNARHLFKKPNEQLSHADQLRLK
TLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKWCSQAEESGLHVLRQFASQLKSYSL

Sequences:

>Translated_384_residues
MMFGFLNMTLWGYLLAGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTGMTTAEWVAIHRKHHANTDME
GDPHSPQVFTLKKVFWQVPELYREASKDKDMIKKYSSGTPNDWIERKLYSPHANKGIFLMLTLNLFLFGIPGLTLWAIQM
MWIPLVAGVVNGIGHYWGYRNHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNARHLFKKPNEQLSHADQLRLK
TLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKWCSQAEESGLHVLRQFASQLKSYSL
>Mature_384_residues
MMFGFLNMTLWGYLLAGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTGMTTAEWVAIHRKHHANTDME
GDPHSPQVFTLKKVFWQVPELYREASKDKDMIKKYSSGTPNDWIERKLYSPHANKGIFLMLTLNLFLFGIPGLTLWAIQM
MWIPLVAGVVNGIGHYWGYRNHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNARHLFKKPNEQLSHADQLRLK
TLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKWCSQAEESGLHVLRQFASQLKSYSL

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45051; Mature: 45051

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFGFLNMTLWGYLLAGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTG
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCC
MTTAEWVAIHRKHHANTDMEGDPHSPQVFTLKKVFWQVPELYREASKDKDMIKKYSSGTP
CCHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
NDWIERKLYSPHANKGIFLMLTLNLFLFGIPGLTLWAIQMMWIPLVAGVVNGIGHYWGYR
HHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
CCCCCCCCCCCCCCCEEEECHHHHCCCCCHHCCCEEEEEEEEECHHHHHHHHHHHHHHHH
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNA
HHCCCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHEEHHHHHHHHHHHCCCHHHH
RHLFKKPNEQLSHADQLRLKTLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKW
HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
CSQAEESGLHVLRQFASQLKSYSL
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMFGFLNMTLWGYLLAGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTG
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCC
MTTAEWVAIHRKHHANTDMEGDPHSPQVFTLKKVFWQVPELYREASKDKDMIKKYSSGTP
CCHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
NDWIERKLYSPHANKGIFLMLTLNLFLFGIPGLTLWAIQMMWIPLVAGVVNGIGHYWGYR
HHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
CCCCCCCCCCCCCCCEEEECHHHHCCCCCHHCCCEEEEEEEEECHHHHHHHHHHHHHHHH
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNA
HHCCCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHEEHHHHHHHHHHHCCCHHHH
RHLFKKPNEQLSHADQLRLKTLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKW
HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
CSQAEESGLHVLRQFASQLKSYSL
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA