| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is bphB [H]
Identifier: 39998446
GI number: 39998446
Start: 3687303
End: 3689687
Strand: Direct
Name: bphB [H]
Synonym: GSU3357
Alternate gene names: 39998446
Gene position: 3687303-3689687 (Clockwise)
Preceding gene: 39998445
Following gene: 39998448
Centisome position: 96.67
GC content: 62.56
Gene sequence:
>2385_bases ATGAATCCCTTGGCCGCCAGCCACTTCCCCTGGTTGCTTTTGCTTCGGACACGCCTCGAACGGTCGTGGGCGCATCTGTG GCGCTCTTTCGCATCGATCCTGGCGGTCCTGACACTTCTCCTTGCCCTCTCGCCCCAGACGGCCCATGCCTCCGCTCCCG GCTCCCTCCTCGGCAAGATCCTTGTGCTGCACTCGTACCATCCTGGCTTCACCTGGACCCGCGAAGTGACGGCCGGCATC ATGGCTGCCTTCAGGGAGGCCGACCCTGATGCGGACCCGTTTGTGGAATACCTTGACGCCAAGCGTTACGGTGGGCCAAT TCACGAGCGGCTCCTGGCGGACCTCTTCCGCCACAAGTTTGCCGGCGCCGGCCTCCAGGTGGTCGTCACCACCGACAACG CCGCCTTCGACTTTGCCGTGAAACACCGTGCCGGGATCTTTCCCCGAGCGGCCATCGTGTTCTGCGGCCTGAACGGATAT TCCGACAGCACCCTGGCCGGCATGTCCAACATCGCCGGCGTCGTGGAGGAAGCCGATCCCCTCAGGACCATCTCTCTCGC CCTCTCCCTCCACCCCGACCGACGCCGGGTGGTGGTCATCAGCGACACGACCGAAACCGGCCGGGCCATTGCCGACAGTG TCCGGCAGGCCAAGGGCAGGTACCGCGACCGGGCAGACATCGCAATCATCCAGGATGTGACCATGACGGAACTTGCCACG GCCGTTGAACGCCTGGGCAATAACTGCCTGATCATCCTTGGGGCCTTCAACCGGGATCGCCAGGGCCGATCCTTCAGCTA TGAGGAGGTCCTGAGGTTTGTGCATGACCGGACCAAGGTCCCCATCTACGGTCTCTGGACCTTCCAGCTGGGCAAGGGCA TCGTCGGCGGCAGCCTGCTGTCCGGCCAACAGCAGGGAGAGGCCGCCGGACGGATCGCGTTGCGCATCGTCAAGGGTGAA CTGCCCGAATCCATCGGGATAAGTCACGCGGTCCCGCCGGTTCTCCGCTTCGACTACAGCGAGTTGAAACGCTTCGGCAT CAGCCACGTCAAGTTGCCCGCCGGGAGCGAAATCGTCAACGAGCCTAACCGCCCCCTGCATACCTATCGCCGCGAACTGG CCATCGCCGCCTCAGCCTTCCTGGTGCTGTGCGGGATCATTGCTCTGCTCGTTATCATGCTGCGCCAGCGTACCCTCCTG GAGCGCAGACTCCGCACCTCCGAGCAGGAGTACCGCCAGCTGGTGCAGAACGCCAACAGCATCATCCTGCGTTTCGATAC GAGCGGGAACATAACCTACCTGAACGAGTTCGCCGAGAGCTTTTTCGGGTACCCGGCCATAGAGCTGGTGGGTAAAAGCG TGGTGGGGACCATCACCCCGGAACGGGAATCTACGGGCAGGGATCTGGCAGCCATGATCGGGGAAATCTGCGAGAACCCC GACAGCTACACCCACAACGTCAACGAGAATGTCATGCGCAACGGTGAACGCGTATGGATCAGCTGGGCCAACAAGCCCCT GGCGGACGAACGGGGCAACCTTCGGGAGATTCTGAGCATCGGCAACGACATCACCCATCTGAAGGAAGCACAGGAGGAAA TCCTCAGGCTCAACGTCGCCCTGGAGGAGCGGGTCCGGGAGCGGACCGCCCAGCTGGAGAGTTCCAACCGGGAGTTAGAG TCGTTCTGCTACTCGGTTTCCCATGACCTGAGGGCTCCCCTGCGGCACATCAACAGCTACAGCAGGATTCTTCTGGATGA GTACCTGCCGCTGCTGGACGAGCAGGCGCAGCATTTCCTGCAACGCCTTCAGGCGGCAAGCCACCGTATGGGACAGCTCA TCGACGATCTGCTGGAGCTGTCGCGAGTGTCCCGTGCGGAGATGGAGTGTGAACGGGTCGATCTGACGGAGCTGTCACGA GGTGTGATCGAGGACCTGCGCGAGGGTGATGACGACCGGAATGTCGAGGTGCGGATCACGGAGGGAATGACCGCTTGGGG CGACCGACGGCTGCTCCTGCTCGTGCTTCAGAATCTCATCGGCAATGCCTGGAAGTACAGCTCGAAGCGGGAATATGCGG TTATTGAGGTTGATGTGGTGCGTCGGAACGGCCGTGAGGTGTTCCTGGTGCGCGACAATGGCGTGGGGTTCGACATGGCC TTTGCCGATAAGCTCTTCGGAGCCTTCCAGCGTCTCCATTCGCCGGCGGAATTCGAGGGGACCGGCATCGGGCTTGCTAC CGTGCAGCGGATCGTCCATCGACACGGGGGGGACATCTGGGCCGAGGCGGAACCGGATCGGGGGGCGACGTTCTTTTTTA CCCTCCCGCCCGAGCAGTGCTCTCCGGCAGAGATGCGGACAGCCTCTCCGCCCGAGGGGACGTGA
Upstream 100 bases:
>100_bases GTGATTCGGCCGTTTCGGCCTCCTGAACGCGGTCGCCGCATCCTCCGGAGCGGGATACCGCGAACAAGGTAGGGCTACAG CCTTACCCGGAGAACACCGG
Downstream 100 bases:
>100_bases GTCAGAGACTGCAGCGCAACAGCTTCTTCCCGTCCCGGAACAGGATTTCGACCTTATTCGGCTTGATGACTGCCGTCACG ATGCCGATGCCGAACGTCGG
Product: sensory box histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 794; Mature: 794
Protein sequence:
>794_residues MNPLAASHFPWLLLLRTRLERSWAHLWRSFASILAVLTLLLALSPQTAHASAPGSLLGKILVLHSYHPGFTWTREVTAGI MAAFREADPDADPFVEYLDAKRYGGPIHERLLADLFRHKFAGAGLQVVVTTDNAAFDFAVKHRAGIFPRAAIVFCGLNGY SDSTLAGMSNIAGVVEEADPLRTISLALSLHPDRRRVVVISDTTETGRAIADSVRQAKGRYRDRADIAIIQDVTMTELAT AVERLGNNCLIILGAFNRDRQGRSFSYEEVLRFVHDRTKVPIYGLWTFQLGKGIVGGSLLSGQQQGEAAGRIALRIVKGE LPESIGISHAVPPVLRFDYSELKRFGISHVKLPAGSEIVNEPNRPLHTYRRELAIAASAFLVLCGIIALLVIMLRQRTLL ERRLRTSEQEYRQLVQNANSIILRFDTSGNITYLNEFAESFFGYPAIELVGKSVVGTITPERESTGRDLAAMIGEICENP DSYTHNVNENVMRNGERVWISWANKPLADERGNLREILSIGNDITHLKEAQEEILRLNVALEERVRERTAQLESSNRELE SFCYSVSHDLRAPLRHINSYSRILLDEYLPLLDEQAQHFLQRLQAASHRMGQLIDDLLELSRVSRAEMECERVDLTELSR GVIEDLREGDDDRNVEVRITEGMTAWGDRRLLLLVLQNLIGNAWKYSSKREYAVIEVDVVRRNGREVFLVRDNGVGFDMA FADKLFGAFQRLHSPAEFEGTGIGLATVQRIVHRHGGDIWAEAEPDRGATFFFTLPPEQCSPAEMRTASPPEGT
Sequences:
>Translated_794_residues MNPLAASHFPWLLLLRTRLERSWAHLWRSFASILAVLTLLLALSPQTAHASAPGSLLGKILVLHSYHPGFTWTREVTAGI MAAFREADPDADPFVEYLDAKRYGGPIHERLLADLFRHKFAGAGLQVVVTTDNAAFDFAVKHRAGIFPRAAIVFCGLNGY SDSTLAGMSNIAGVVEEADPLRTISLALSLHPDRRRVVVISDTTETGRAIADSVRQAKGRYRDRADIAIIQDVTMTELAT AVERLGNNCLIILGAFNRDRQGRSFSYEEVLRFVHDRTKVPIYGLWTFQLGKGIVGGSLLSGQQQGEAAGRIALRIVKGE LPESIGISHAVPPVLRFDYSELKRFGISHVKLPAGSEIVNEPNRPLHTYRRELAIAASAFLVLCGIIALLVIMLRQRTLL ERRLRTSEQEYRQLVQNANSIILRFDTSGNITYLNEFAESFFGYPAIELVGKSVVGTITPERESTGRDLAAMIGEICENP DSYTHNVNENVMRNGERVWISWANKPLADERGNLREILSIGNDITHLKEAQEEILRLNVALEERVRERTAQLESSNRELE SFCYSVSHDLRAPLRHINSYSRILLDEYLPLLDEQAQHFLQRLQAASHRMGQLIDDLLELSRVSRAEMECERVDLTELSR GVIEDLREGDDDRNVEVRITEGMTAWGDRRLLLLVLQNLIGNAWKYSSKREYAVIEVDVVRRNGREVFLVRDNGVGFDMA FADKLFGAFQRLHSPAEFEGTGIGLATVQRIVHRHGGDIWAEAEPDRGATFFFTLPPEQCSPAEMRTASPPEGT >Mature_794_residues MNPLAASHFPWLLLLRTRLERSWAHLWRSFASILAVLTLLLALSPQTAHASAPGSLLGKILVLHSYHPGFTWTREVTAGI MAAFREADPDADPFVEYLDAKRYGGPIHERLLADLFRHKFAGAGLQVVVTTDNAAFDFAVKHRAGIFPRAAIVFCGLNGY SDSTLAGMSNIAGVVEEADPLRTISLALSLHPDRRRVVVISDTTETGRAIADSVRQAKGRYRDRADIAIIQDVTMTELAT AVERLGNNCLIILGAFNRDRQGRSFSYEEVLRFVHDRTKVPIYGLWTFQLGKGIVGGSLLSGQQQGEAAGRIALRIVKGE LPESIGISHAVPPVLRFDYSELKRFGISHVKLPAGSEIVNEPNRPLHTYRRELAIAASAFLVLCGIIALLVIMLRQRTLL ERRLRTSEQEYRQLVQNANSIILRFDTSGNITYLNEFAESFFGYPAIELVGKSVVGTITPERESTGRDLAAMIGEICENP DSYTHNVNENVMRNGERVWISWANKPLADERGNLREILSIGNDITHLKEAQEEILRLNVALEERVRERTAQLESSNRELE SFCYSVSHDLRAPLRHINSYSRILLDEYLPLLDEQAQHFLQRLQAASHRMGQLIDDLLELSRVSRAEMECERVDLTELSR GVIEDLREGDDDRNVEVRITEGMTAWGDRRLLLLVLQNLIGNAWKYSSKREYAVIEVDVVRRNGREVFLVRDNGVGFDMA FADKLFGAFQRLHSPAEFEGTGIGLATVQRIVHRHGGDIWAEAEPDRGATFFFTLPPEQCSPAEMRTASPPEGT
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI48994928, Length=402, Percent_Identity=25.8706467661692, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1788549, Length=386, Percent_Identity=26.1658031088083, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1789149, Length=256, Percent_Identity=26.953125, Blast_Score=81, Evalue=3e-16, Organism=Escherichia coli, GI1786912, Length=283, Percent_Identity=28.6219081272085, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI145693157, Length=251, Percent_Identity=25.8964143426295, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1790436, Length=221, Percent_Identity=28.0542986425339, Blast_Score=70, Evalue=6e-13, Organism=Escherichia coli, GI1787894, Length=246, Percent_Identity=26.0162601626016, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786600, Length=231, Percent_Identity=26.8398268398268, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1786783, Length=226, Percent_Identity=25.6637168141593, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 88917; Mature: 88917
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPLAASHFPWLLLLRTRLERSWAHLWRSFASILAVLTLLLALSPQTAHASAPGSLLGKI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH LVLHSYHPGFTWTREVTAGIMAAFREADPDADPFVEYLDAKRYGGPIHERLLADLFRHKF HHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AGAGLQVVVTTDNAAFDFAVKHRAGIFPRAAIVFCGLNGYSDSTLAGMSNIAGVVEEADP CCCCEEEEEEECCCCEEEEHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC LRTISLALSLHPDRRRVVVISDTTETGRAIADSVRQAKGRYRDRADIAIIQDVTMTELAT CEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH AVERLGNNCLIILGAFNRDRQGRSFSYEEVLRFVHDRTKVPIYGLWTFQLGKGIVGGSLL HHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCHHH SGQQQGEAAGRIALRIVKGELPESIGISHAVPPVLRFDYSELKRFGISHVKLPAGSEIVN CCCCCCCHHHHEEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHCCCCEEECCCCCHHHC EPNRPLHTYRRELAIAASAFLVLCGIIALLVIMLRQRTLLERRLRTSEQEYRQLVQNANS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCE IILRFDTSGNITYLNEFAESFFGYPAIELVGKSVVGTITPERESTGRDLAAMIGEICENP EEEEEECCCCEEHHHHHHHHHCCCCHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHCCC DSYTHNVNENVMRNGERVWISWANKPLADERGNLREILSIGNDITHLKEAQEEILRLNVA CCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH LEERVRERTAQLESSNRELESFCYSVSHDLRAPLRHINSYSRILLDEYLPLLDEQAQHFL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLQAASHRMGQLIDDLLELSRVSRAEMECERVDLTELSRGVIEDLREGDDDRNVEVRIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEE EGMTAWGDRRLLLLVLQNLIGNAWKYSSKREYAVIEVDVVRRNGREVFLVRDNGVGFDMA CCCCCCCCCHHHHHHHHHHHCCHHCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCHHH FADKLFGAFQRLHSPAEFEGTGIGLATVQRIVHRHGGDIWAEAEPDRGATFFFTLPPEQC HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCC SPAEMRTASPPEGT CCCCCCCCCCCCCC >Mature Secondary Structure MNPLAASHFPWLLLLRTRLERSWAHLWRSFASILAVLTLLLALSPQTAHASAPGSLLGKI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH LVLHSYHPGFTWTREVTAGIMAAFREADPDADPFVEYLDAKRYGGPIHERLLADLFRHKF HHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AGAGLQVVVTTDNAAFDFAVKHRAGIFPRAAIVFCGLNGYSDSTLAGMSNIAGVVEEADP CCCCEEEEEEECCCCEEEEHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC LRTISLALSLHPDRRRVVVISDTTETGRAIADSVRQAKGRYRDRADIAIIQDVTMTELAT CEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH AVERLGNNCLIILGAFNRDRQGRSFSYEEVLRFVHDRTKVPIYGLWTFQLGKGIVGGSLL HHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCHHH SGQQQGEAAGRIALRIVKGELPESIGISHAVPPVLRFDYSELKRFGISHVKLPAGSEIVN CCCCCCCHHHHEEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHCCCCEEECCCCCHHHC EPNRPLHTYRRELAIAASAFLVLCGIIALLVIMLRQRTLLERRLRTSEQEYRQLVQNANS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCE IILRFDTSGNITYLNEFAESFFGYPAIELVGKSVVGTITPERESTGRDLAAMIGEICENP EEEEEECCCCEEHHHHHHHHHCCCCHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHCCC DSYTHNVNENVMRNGERVWISWANKPLADERGNLREILSIGNDITHLKEAQEEILRLNVA CCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH LEERVRERTAQLESSNRELESFCYSVSHDLRAPLRHINSYSRILLDEYLPLLDEQAQHFL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLQAASHRMGQLIDDLLELSRVSRAEMECERVDLTELSRGVIEDLREGDDDRNVEVRIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEE EGMTAWGDRRLLLLVLQNLIGNAWKYSSKREYAVIEVDVVRRNGREVFLVRDNGVGFDMA CCCCCCCCCHHHHHHHHHHHCCHHCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCHHH FADKLFGAFQRLHSPAEFEGTGIGLATVQRIVHRHGGDIWAEAEPDRGATFFFTLPPEQC HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCC SPAEMRTASPPEGT CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]