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The map label for this gene is ccsA [H]

Identifier: 39998372

GI number: 39998372

Start: 3601854

End: 3602669

Strand: Direct

Name: ccsA [H]

Synonym: GSU3283

Alternate gene names: 39998372

Gene position: 3601854-3602669 (Clockwise)

Preceding gene: 39998371

Following gene: 39998373

Centisome position: 94.43

GC content: 59.56

Gene sequence:

>816_bases
ATGAACGCCGTTCTTTTCGTCGCAACACTACTGCTCTACCTTGCTGCGACCGTCGCCTATCTCGCGTTTCTCGTCAAACC
GCGAGAGGTACTCGGCAAGATCTCCCGATGGGTACTGACCGGCGGATTCGTGGTCCATGCCGTCTATACCGTGGACCGCT
ATATCGAGGCGGGCTACACGCCGATTACCAACCTCCACGAATCGCTCTCCTTTTTCGGTTTGGCGATCGCTGGGGTCTAC
CTGATCTTTGAGCGCAAGTACCGCACCATCATCCTCGGCTCCTTCGTTACCCCCCTCGTGCTCTTGATCCTGATCGGCTC
CACCGGCTTCCCCTCGGCCATCTCGCCGCTCAATCCGGCTCTCAAGAGCCGCTGGCTCGCCGTCCATACGGTCATGGCGT
TCCTGAGCTACGCAGCGTTCGCGGTAGCCTTCGGCGCCGCCATCATGTACCTGATCCAGGAGCATTTTCTCAAGAGCAAG
AAGCTCGGCGCACTCTACCAGAAGCTTCCCTCCCTGGACGTGCTCGATGAAATCAACTACCGCTGCCTCACCCTCGGCTT
TCCGCTCCTTACCTTCGCGATCATCAGCGGCGCCATCTGGGCGGAAAGCGCCTGGGGCACTTACTGGAGCTGGGACCCGA
AGGAAACGTGGTCCCTCATTACGTGGTTCGTCTACGCTGCACTCCTCCACGGCCGGCTCACCACCGGCTGGCGCGGCAAA
AAGGCGGCCTGGCTCGCCATCATCGGTTTTTTCGTGCTCCTCTTTACCTTTCTCGGCGTGAACCTTTTCATGTCGGGGCT
GCACAGCTACACGTGA

Upstream 100 bases:

>100_bases
TCAGATCGCGGAACTTCGAGGAACTGGACCGAACCCTCGCACGCATCGCCGGTCCCGACTTCACCCTGGAAAACCTGGGA
TTCGGGAGAAAGGACTCCCC

Downstream 100 bases:

>100_bases
GAAAAGAGGCATACTGATATGAACATTGTTGTGGTGGGGCTCTCGCACAAGACAGCCTCCGTGGAAATTCGCGAGAAAAT
CGCTTTTGCCCCGACCCAGA

Product: CcmF/CcyK/CcsA family cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MNAVLFVATLLLYLAATVAYLAFLVKPREVLGKISRWVLTGGFVVHAVYTVDRYIEAGYTPITNLHESLSFFGLAIAGVY
LIFERKYRTIILGSFVTPLVLLILIGSTGFPSAISPLNPALKSRWLAVHTVMAFLSYAAFAVAFGAAIMYLIQEHFLKSK
KLGALYQKLPSLDVLDEINYRCLTLGFPLLTFAIISGAIWAESAWGTYWSWDPKETWSLITWFVYAALLHGRLTTGWRGK
KAAWLAIIGFFVLLFTFLGVNLFMSGLHSYT

Sequences:

>Translated_271_residues
MNAVLFVATLLLYLAATVAYLAFLVKPREVLGKISRWVLTGGFVVHAVYTVDRYIEAGYTPITNLHESLSFFGLAIAGVY
LIFERKYRTIILGSFVTPLVLLILIGSTGFPSAISPLNPALKSRWLAVHTVMAFLSYAAFAVAFGAAIMYLIQEHFLKSK
KLGALYQKLPSLDVLDEINYRCLTLGFPLLTFAIISGAIWAESAWGTYWSWDPKETWSLITWFVYAALLHGRLTTGWRGK
KAAWLAIIGFFVLLFTFLGVNLFMSGLHSYT
>Mature_271_residues
MNAVLFVATLLLYLAATVAYLAFLVKPREVLGKISRWVLTGGFVVHAVYTVDRYIEAGYTPITNLHESLSFFGLAIAGVY
LIFERKYRTIILGSFVTPLVLLILIGSTGFPSAISPLNPALKSRWLAVHTVMAFLSYAAFAVAFGAAIMYLIQEHFLKSK
KLGALYQKLPSLDVLDEINYRCLTLGFPLLTFAIISGAIWAESAWGTYWSWDPKETWSLITWFVYAALLHGRLTTGWRGK
KAAWLAIIGFFVLLFTFLGVNLFMSGLHSYT

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1790511, Length=162, Percent_Identity=31.4814814814815, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788524, Length=161, Percent_Identity=31.6770186335404, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30242; Mature: 30242

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA