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The map label for this gene is hcP-2 [H]

Identifier: 39998264

GI number: 39998264

Start: 3483262

End: 3483747

Strand: Direct

Name: hcP-2 [H]

Synonym: GSU3174

Alternate gene names: 39998264

Gene position: 3483262-3483747 (Clockwise)

Preceding gene: 39998263

Following gene: 39998265

Centisome position: 91.32

GC content: 55.56

Gene sequence:

>486_bases
ATGGCAATGCCCGCCCACATGACCCTGACTGGAGAAAAACAGGGAAAGATCGACGGTTCCTGCGAACTGCAGGGGCGCGA
AAACACTATCCAGCTTTACGAAATGAAGCACGACATCCACATGCCGCGCAATCCCCATGACGGCCTGCCCACCGGCAAGC
GCGTCCATGGCCCCCTGTCGATCGTCAAGATGTTCGACAAGAGTTCGCCGAAACTCTATCAGGCCCTCTGCACCGGAGAG
CACATGAAAAACGTGCAGATCAAGTGGTACCGTATCAACAAACAAGGGCTGGAAGAGCACTATTTCACCACCACCCTTGA
GGATGCCATCGTGGTCGAGATGAAACCCTACATGCCCATGACGCTCCTTCCTGCGAACGAGCCCTACGGCCATATGGAAG
AGGTGGCATTCTCCTACAAGAAGATCAAGTGGACCTGGGAGCCCAACGGTATCGAGGCTGAGGATTCCTGGAGCGTGCCC
AAGTAG

Upstream 100 bases:

>100_bases
GAAACTGGATAAAGAGTAGGGACGCGACAGAATCCGAGACTGTGCCTGCAATGCGGACCATCAGGGGCCGCAATTTAACA
TCACAAGGAGGTAGCAGCAG

Downstream 100 bases:

>100_bases
TTATTTTCTGATGGTATGCCCTCCTCGGCGACGGGGAGGGTGCATTTTCAGATAATCTCAACATTGCAACATGGCGTGTG
CATTACCCGAAGATGGCAAA

Product: hcp protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MAMPAHMTLTGEKQGKIDGSCELQGRENTIQLYEMKHDIHMPRNPHDGLPTGKRVHGPLSIVKMFDKSSPKLYQALCTGE
HMKNVQIKWYRINKQGLEEHYFTTTLEDAIVVEMKPYMPMTLLPANEPYGHMEEVAFSYKKIKWTWEPNGIEAEDSWSVP
K

Sequences:

>Translated_161_residues
MAMPAHMTLTGEKQGKIDGSCELQGRENTIQLYEMKHDIHMPRNPHDGLPTGKRVHGPLSIVKMFDKSSPKLYQALCTGE
HMKNVQIKWYRINKQGLEEHYFTTTLEDAIVVEMKPYMPMTLLPANEPYGHMEEVAFSYKKIKWTWEPNGIEAEDSWSVP
K
>Mature_160_residues
AMPAHMTLTGEKQGKIDGSCELQGRENTIQLYEMKHDIHMPRNPHDGLPTGKRVHGPLSIVKMFDKSSPKLYQALCTGEH
MKNVQIKWYRINKQGLEEHYFTTTLEDAIVVEMKPYMPMTLLPANEPYGHMEEVAFSYKKIKWTWEPNGIEAEDSWSVPK

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18590; Mature: 18458

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMPAHMTLTGEKQGKIDGSCELQGRENTIQLYEMKHDIHMPRNPHDGLPTGKRVHGPLS
CCCCCEEEEECCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCEECCHHH
IVKMFDKSSPKLYQALCTGEHMKNVQIKWYRINKQGLEEHYFTTTLEDAIVVEMKPYMPM
HHHHHCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHEEEECCCEEEEEECCCCCE
TLLPANEPYGHMEEVAFSYKKIKWTWEPNGIEAEDSWSVPK
EEEECCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
AMPAHMTLTGEKQGKIDGSCELQGRENTIQLYEMKHDIHMPRNPHDGLPTGKRVHGPLS
CCCCEEEEECCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCEECCHHH
IVKMFDKSSPKLYQALCTGEHMKNVQIKWYRINKQGLEEHYFTTTLEDAIVVEMKPYMPM
HHHHHCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHEEEECCCEEEEEECCCCCE
TLLPANEPYGHMEEVAFSYKKIKWTWEPNGIEAEDSWSVPK
EEEECCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]