Click here to switch to the map view.

The map label for this gene is 39998171

Identifier: 39998171

GI number: 39998171

Start: 3388257

End: 3388607

Strand: Reverse

Name: 39998171

Synonym: GSU3081

Alternate gene names: NA

Gene position: 3388607-3388257 (Counterclockwise)

Preceding gene: 39998174

Following gene: 39998170

Centisome position: 88.84

GC content: 62.39

Gene sequence:

>351_bases
GTGTCCAAGAAAACCGGGGCCGCCATAGGAGATATCAGCAGTCTGGAGGAGAATCTCGGAGCCCGCAAGGCGGAGCTTAC
GGCCGCGCTGGAGCGTCTCGATCAGGAGATTGCCTCTGATGCCTCCGCCAAGGCCGACACTGCCAAGGGGATTCCGGCGT
CACTGCTCAAGCGGTACGAAGCCTTGCGCCTTCGCCGACAGGGCGTGGCTCTCGTGGCTGCCAGGAGCGGTAACTGCTCG
GGCTGCAACATGAACCTGCCACCCCAGCTTTACAACTCGCTCTACAAAGGGGACGATCTGGTCCTCTGTCCTCACTGCCA
GCGGATGCTGGTGCTCCGTCAGGACGCCTGA

Upstream 100 bases:

>100_bases
GCTGCTCCAGTCGAGCTACGCTCTCCTTCCGCCGCACCGGAGACACTGACATCCTTTTCCATTGACGACCTCCTTGAACA
CCTAGATTTACCTCATTTTC

Downstream 100 bases:

>100_bases
CGCGGGCTTATTGAATAACGGCTTGGTCGAAGCAGAACAGATGGCCGCCCTTCGCGTGCGGGGGGAGGAAAGTCCGGGCT
CCACAGGGCATGGTGCTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSKKTGAAIGDISSLEENLGARKAELTAALERLDQEIASDASAKADTAKGIPASLLKRYEALRLRRQGVALVAARSGNCS
GCNMNLPPQLYNSLYKGDDLVLCPHCQRMLVLRQDA

Sequences:

>Translated_116_residues
MSKKTGAAIGDISSLEENLGARKAELTAALERLDQEIASDASAKADTAKGIPASLLKRYEALRLRRQGVALVAARSGNCS
GCNMNLPPQLYNSLYKGDDLVLCPHCQRMLVLRQDA
>Mature_115_residues
SKKTGAAIGDISSLEENLGARKAELTAALERLDQEIASDASAKADTAKGIPASLLKRYEALRLRRQGVALVAARSGNCSG
CNMNLPPQLYNSLYKGDDLVLCPHCQRMLVLRQDA

Specific function: Unknown

COG id: COG1579

COG function: function code R; Zn-ribbon protein, possibly nucleic acid-binding

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12458; Mature: 12327

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKTGAAIGDISSLEENLGARKAELTAALERLDQEIASDASAKADTAKGIPASLLKRYE
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
ALRLRRQGVALVAARSGNCSGCNMNLPPQLYNSLYKGDDLVLCPHCQRMLVLRQDA
HHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEECCCHHHHHHHHCCC
>Mature Secondary Structure 
SKKTGAAIGDISSLEENLGARKAELTAALERLDQEIASDASAKADTAKGIPASLLKRYE
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
ALRLRRQGVALVAARSGNCSGCNMNLPPQLYNSLYKGDDLVLCPHCQRMLVLRQDA
HHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEECCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA