Click here to switch to the map view.

The map label for this gene is fliA [H]

Identifier: 39998144

GI number: 39998144

Start: 3354638

End: 3355390

Strand: Reverse

Name: fliA [H]

Synonym: GSU3053

Alternate gene names: 39998144

Gene position: 3355390-3354638 (Counterclockwise)

Preceding gene: 39998145

Following gene: 39998143

Centisome position: 87.97

GC content: 59.1

Gene sequence:

>753_bases
ATGAATTGCATGCTGAAGGCATACGAGCAGGAGGCCCAACGGTCGGTGGCCCAGACCCGCGACGAACTCATCGTGAACCA
TCTGCCACTGGTCAAATTCCTGGTCGGGCGGATTGCCTCCCAGCTTCCCCCGCATCTGGACCAGGAAGACCTCATGAGCG
CGGCGATCATTGGTCTGATCACCGCTGCGGAGCGCTTTGACCCGACCCGGGGCGTACAGTTCAAGACTTTTGCCGAGCAG
CGGATCCGGGGAACCATTATCGATGAACTCCGTTCCCAGGACTGGCTGACCCGGTCTCTGCGGGACAAGTTCAAGAAACT
GGAGAAGGAATTCGTGCTCCTGGAGCACCAGTTGGGGCGCAATCCCACCAGCGAAGAGGTGGCCACCGCCCTCAAGATGA
GTGTGGACGAGTATTACCAGATGCTGGAGGAGATTCATCTCCTCTCCTTCGTCAGTCTGGATGAGTCCTGGGAGGACGAC
GACGGCAGCCCCTTCGGGCTCCTGGATATCCTGGCCGACACCTCCATCGAGAACCCCCAGAGCCAGCTCATGGCGCGCCA
GATGCTCGATTCGCTCACCGAGTCCATTGAGTCGCTTCCCGAAAAGGAACGGTTGGTCATTACCCTCTACTACTACGAGG
AACTGAACCTGAAGGAAATCGGCGCCGTGCTGGAACTGTCGGAGTCGCGCATCTCCCAGCTTCACAGCCAGGCCATCGTG
CGGCTGCGGGCCAAGATGAAGAACATGAGGTAG

Upstream 100 bases:

>100_bases
CGCTGGCGCGGCGCATCCTTGAAAACAGCGGCGAGCGGCGCGTGAAGGGGAACGTTCAGTTCTTCTTCCGGCGCTTCCTC
GGCGCACCGGTGGAGAACCT

Downstream 100 bases:

>100_bases
GGGCGGCGCCCCGTGGAGGATACTCTATGAACAGCGGCATCTATTCGGCACTTTCCGGCAATATCGCAGCCATGAAGCGG
CTCGACGTCCTTTCCAACAA

Product: RNA polymerase sigma factor for flagellar operon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNCMLKAYEQEAQRSVAQTRDELIVNHLPLVKFLVGRIASQLPPHLDQEDLMSAAIIGLITAAERFDPTRGVQFKTFAEQ
RIRGTIIDELRSQDWLTRSLRDKFKKLEKEFVLLEHQLGRNPTSEEVATALKMSVDEYYQMLEEIHLLSFVSLDESWEDD
DGSPFGLLDILADTSIENPQSQLMARQMLDSLTESIESLPEKERLVITLYYYEELNLKEIGAVLELSESRISQLHSQAIV
RLRAKMKNMR

Sequences:

>Translated_250_residues
MNCMLKAYEQEAQRSVAQTRDELIVNHLPLVKFLVGRIASQLPPHLDQEDLMSAAIIGLITAAERFDPTRGVQFKTFAEQ
RIRGTIIDELRSQDWLTRSLRDKFKKLEKEFVLLEHQLGRNPTSEEVATALKMSVDEYYQMLEEIHLLSFVSLDESWEDD
DGSPFGLLDILADTSIENPQSQLMARQMLDSLTESIESLPEKERLVITLYYYEELNLKEIGAVLELSESRISQLHSQAIV
RLRAKMKNMR
>Mature_250_residues
MNCMLKAYEQEAQRSVAQTRDELIVNHLPLVKFLVGRIASQLPPHLDQEDLMSAAIIGLITAAERFDPTRGVQFKTFAEQ
RIRGTIIDELRSQDWLTRSLRDKFKKLEKEFVLLEHQLGRNPTSEEVATALKMSVDEYYQMLEEIHLLSFVSLDESWEDD
DGSPFGLLDILADTSIENPQSQLMARQMLDSLTESIESLPEKERLVITLYYYEELNLKEIGAVLELSESRISQLHSQAIV
RLRAKMKNMR

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=223, Percent_Identity=46.1883408071749, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI1789098, Length=246, Percent_Identity=30.0813008130081, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789448, Length=204, Percent_Identity=25.9803921568627, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 28827; Mature: 28827

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCMLKAYEQEAQRSVAQTRDELIVNHLPLVKFLVGRIASQLPPHLDQEDLMSAAIIGLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TAAERFDPTRGVQFKTFAEQRIRGTIIDELRSQDWLTRSLRDKFKKLEKEFVLLEHQLGR
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NPTSEEVATALKMSVDEYYQMLEEIHLLSFVSLDESWEDDDGSPFGLLDILADTSIENPQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHH
SQLMARQMLDSLTESIESLPEKERLVITLYYYEELNLKEIGAVLELSESRISQLHSQAIV
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLRAKMKNMR
HHHHHHHCCC
>Mature Secondary Structure
MNCMLKAYEQEAQRSVAQTRDELIVNHLPLVKFLVGRIASQLPPHLDQEDLMSAAIIGLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TAAERFDPTRGVQFKTFAEQRIRGTIIDELRSQDWLTRSLRDKFKKLEKEFVLLEHQLGR
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NPTSEEVATALKMSVDEYYQMLEEIHLLSFVSLDESWEDDDGSPFGLLDILADTSIENPQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHH
SQLMARQMLDSLTESIESLPEKERLVITLYYYEELNLKEIGAVLELSESRISQLHSQAIV
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLRAKMKNMR
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]