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The map label for this gene is csrA

Identifier: 39998132

GI number: 39998132

Start: 3346282

End: 3346521

Strand: Reverse

Name: csrA

Synonym: GSU3041

Alternate gene names: 39998132

Gene position: 3346521-3346282 (Counterclockwise)

Preceding gene: 39998133

Following gene: 39998131

Centisome position: 87.74

GC content: 54.58

Gene sequence:

>240_bases
ATGTTAGTACTGACCAGAAAAATGGGAGAAGTAGTCACCATCGGCGATTCCATCAGGATCAAGGTGGTGGAGATGAAAGG
AAACCAAGTGCGGCTCGGCATCGAGGCTCCCAACGACATGCGCATCTACCGTGAGGAAATCTATATCAAGGTTCAGCGCG
AAAACCAGATTGCCGCTTCGTGGAGCCTGGCGGACCTGGAGAAGGCGGTAACCTGCCTCGGCGCGGACGGGAAGGAGTAA

Upstream 100 bases:

>100_bases
AGCAGACGGCCTTTGAAGCGGCAATCGCGGCATCGGGGAAAATTTCACAGATTTCACTTCTTGACTACCTCTCGTAGGGG
GAAGGGCGCCAGGAGGGCGT

Downstream 100 bases:

>100_bases
TAACGTGAACGTGACCACCACGCGCTTCGGCGAGATAGCAGTTGAAGAGGCGAAAATCATCACCCTCCCCGACGGGATGC
TCGGATTCTCCGAGAAACGC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MLVLTRKMGEVVTIGDSIRIKVVEMKGNQVRLGIEAPNDMRIYREEIYIKVQRENQIAASWSLADLEKAVTCLGADGKE

Sequences:

>Translated_79_residues
MLVLTRKMGEVVTIGDSIRIKVVEMKGNQVRLGIEAPNDMRIYREEIYIKVQRENQIAASWSLADLEKAVTCLGADGKE
>Mature_79_residues
MLVLTRKMGEVVTIGDSIRIKVVEMKGNQVRLGIEAPNDMRIYREEIYIKVQRENQIAASWSLADLEKAVTCLGADGKE

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=61, Percent_Identity=45.9016393442623, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_GEOSL (Q748G1)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_954083.1
- ProteinModelPortal:   Q748G1
- SMR:   Q748G1
- GeneID:   2686792
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU3041
- NMPDR:   fig|243231.1.peg.3021
- TIGR:   GSU3041
- HOGENOM:   HBG724655
- OMA:   ISIHREE
- ProtClustDB:   CLSK829069
- BioCyc:   GSUL243231:GSU_3041-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8893; Mature: 8893

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLTRKMGEVVTIGDSIRIKVVEMKGNQVRLGIEAPNDMRIYREEIYIKVQRENQIAAS
CEEEECCCCCEEEECCCEEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEE
WSLADLEKAVTCLGADGKE
ECHHHHHHHHEEECCCCCC
>Mature Secondary Structure
MLVLTRKMGEVVTIGDSIRIKVVEMKGNQVRLGIEAPNDMRIYREEIYIKVQRENQIAAS
CEEEECCCCCEEEECCCEEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEE
WSLADLEKAVTCLGADGKE
ECHHHHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA