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The map label for this gene is yjiM [C]

Identifier: 39998035

GI number: 39998035

Start: 3241463

End: 3242758

Strand: Direct

Name: yjiM [C]

Synonym: GSU2944

Alternate gene names: 39998035

Gene position: 3241463-3242758 (Clockwise)

Preceding gene: 39998034

Following gene: 39998036

Centisome position: 84.99

GC content: 61.65

Gene sequence:

>1296_bases
ATGACACCGGAACAGTTTGAAGTGAAGGCCAACCCGGCACTGTGGGAACGCCTGGGGATGAACGTTGAACGGTTTAGCGG
CATGCCGAAAATGCTGACCGAGGCATTCCGAGGCATCTATCTGAGCCAGAAGAACAGGCCGGCGCGGATGGAGTACTTCG
ACGGCATGATTGCCGAGCTCCACAGCGGCCGGGTCGAGGAGCTCGTGACGGCCAAGGACGCCGGCCGCCCCGTAGTGGGA
ACGTTCTGCGTATATGTGCCCGAAGAGGTCATCATGGCAGTGGGCGGCATCTGCGTGGGGCTGTGCGGCGGCTCCCAGGG
ATCCATTCCCGATGCGGAGAAAGTCCTGCCCCGTAACATCTGCCCCATGGTGAAGTCGGCCTTCGGATTCAAGCTCGGCA
AGATTTGCCCCTACTTCCAGGCCGTCGACCTGGTCTACGGCGAAACTACCTGCGATGCCAAGAAAAAGACCTGGGAGCTC
CTGGACCGCGAAGTGCCGACTCACGTAATGGAGATTCCCCAGATGAAGCGGGCGCGGGACAAAGCCCTCTGGCTGGAGGA
GGTAAAGGATTTTACCTCAAAGATGGAGGAGGTATCCGGCAGGAAGGCAACGGCCGAAGGGATCGGCGCCGCCATCCGGG
TCATGAACGCCAAGCGCCTCGCCCTCCAGCGCCTCAACGACCTGCGCCACCACACCCCCTCGCCCATCAGCGGCAAGGAT
ATGCTCCTCATCCAGCAGATCGCGTTCTATGATGATCCGGCCCGCTTCACCGCCAACGTGAACGAGCTCTGCGATGAACT
GGATGAGCGGATCGCCGCCGGCGTGGCCGTTGCCCCCGCTGCCACCCCACGGGTTATGGTATCGGGCACTCCGATGGCCC
TCCCCAACTGGAAGCTCCATCACCTGATCGAATCCGCCGGCGCCGTGGTAGTTAATGAGGAAAGCTGTATCGGTACCCGG
TACTACAAGGACCTGACCGACGAGAGCACCGCCACCGTCGACGAGCAACTGAGCCTGCTGACCGACCGGTACATGAAGAT
CGACTGCTCCTGCTTCACCCCCAACGACGACCGGATCGAGCAGGTGCTGGTCGAATACCGGGCGTCCGGCGCCCAGGGAC
TCATCGACTACTGCCTCCAGTTCTGCCACACCTACAACATCGAAGCGGTCAAGCTGCGGGAGATGTGTGAGCGGGAGGGG
ATACCGTTCCTGGCCATCGAGACCGACTACTCCCCCGAAGATGTGGGGCAGCTCCAGACGCGGATCGAAGCGTTCATAGA
GCAGATCCGGGGCTGA

Upstream 100 bases:

>100_bases
CAATGCCATTGTTTTAAATCATAAATATTATCAATTTGACATATGCATACAATGCAATTGAAATACGCATTATTTTACCG
CTTGTTGAGGAGGGGAACGG

Downstream 100 bases:

>100_bases
AACGATGCTGATCGGGATCGACCTGGGCTCGCGTTCCATCAAGCTGGCCGCGGTTAAGGATGGAATCCTGGCGGAAAGCC
TGGTCGTGGAGAGCGGGTTC

Product: (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MTPEQFEVKANPALWERLGMNVERFSGMPKMLTEAFRGIYLSQKNRPARMEYFDGMIAELHSGRVEELVTAKDAGRPVVG
TFCVYVPEEVIMAVGGICVGLCGGSQGSIPDAEKVLPRNICPMVKSAFGFKLGKICPYFQAVDLVYGETTCDAKKKTWEL
LDREVPTHVMEIPQMKRARDKALWLEEVKDFTSKMEEVSGRKATAEGIGAAIRVMNAKRLALQRLNDLRHHTPSPISGKD
MLLIQQIAFYDDPARFTANVNELCDELDERIAAGVAVAPAATPRVMVSGTPMALPNWKLHHLIESAGAVVVNEESCIGTR
YYKDLTDESTATVDEQLSLLTDRYMKIDCSCFTPNDDRIEQVLVEYRASGAQGLIDYCLQFCHTYNIEAVKLREMCEREG
IPFLAIETDYSPEDVGQLQTRIEAFIEQIRG

Sequences:

>Translated_431_residues
MTPEQFEVKANPALWERLGMNVERFSGMPKMLTEAFRGIYLSQKNRPARMEYFDGMIAELHSGRVEELVTAKDAGRPVVG
TFCVYVPEEVIMAVGGICVGLCGGSQGSIPDAEKVLPRNICPMVKSAFGFKLGKICPYFQAVDLVYGETTCDAKKKTWEL
LDREVPTHVMEIPQMKRARDKALWLEEVKDFTSKMEEVSGRKATAEGIGAAIRVMNAKRLALQRLNDLRHHTPSPISGKD
MLLIQQIAFYDDPARFTANVNELCDELDERIAAGVAVAPAATPRVMVSGTPMALPNWKLHHLIESAGAVVVNEESCIGTR
YYKDLTDESTATVDEQLSLLTDRYMKIDCSCFTPNDDRIEQVLVEYRASGAQGLIDYCLQFCHTYNIEAVKLREMCEREG
IPFLAIETDYSPEDVGQLQTRIEAFIEQIRG
>Mature_430_residues
TPEQFEVKANPALWERLGMNVERFSGMPKMLTEAFRGIYLSQKNRPARMEYFDGMIAELHSGRVEELVTAKDAGRPVVGT
FCVYVPEEVIMAVGGICVGLCGGSQGSIPDAEKVLPRNICPMVKSAFGFKLGKICPYFQAVDLVYGETTCDAKKKTWELL
DREVPTHVMEIPQMKRARDKALWLEEVKDFTSKMEEVSGRKATAEGIGAAIRVMNAKRLALQRLNDLRHHTPSPISGKDM
LLIQQIAFYDDPARFTANVNELCDELDERIAAGVAVAPAATPRVMVSGTPMALPNWKLHHLIESAGAVVVNEESCIGTRY
YKDLTDESTATVDEQLSLLTDRYMKIDCSCFTPNDDRIEQVLVEYRASGAQGLIDYCLQFCHTYNIEAVKLREMCEREGI
PFLAIETDYSPEDVGQLQTRIEAFIEQIRG

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiM [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=369, Percent_Identity=38.4823848238482, Blast_Score=246, Evalue=2e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 48195; Mature: 48064

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPEQFEVKANPALWERLGMNVERFSGMPKMLTEAFRGIYLSQKNRPARMEYFDGMIAEL
CCCCCEEEECCHHHHHHHCCCHHHHCCCHHHHHHHHHCEEECCCCCCCHHHHHHHHHHHH
HSGRVEELVTAKDAGRPVVGTFCVYVPEEVIMAVGGICVGLCGGSQGSIPDAEKVLPRNI
HCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHCCHHH
CPMVKSAFGFKLGKICPYFQAVDLVYGETTCDAKKKTWELLDREVPTHVMEIPQMKRARD
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KALWLEEVKDFTSKMEEVSGRKATAEGIGAAIRVMNAKRLALQRLNDLRHHTPSPISGKD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
MLLIQQIAFYDDPARFTANVNELCDELDERIAAGVAVAPAATPRVMVSGTPMALPNWKLH
HHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCEEECCCCCCEEEECCCCCCCCCHHHH
HLIESAGAVVVNEESCIGTRYYKDLTDESTATVDEQLSLLTDRYMKIDCSCFTPNDDRIE
HHHHHCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCHHHHH
QVLVEYRASGAQGLIDYCLQFCHTYNIEAVKLREMCEREGIPFLAIETDYSPEDVGQLQT
HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
RIEAFIEQIRG
HHHHHHHHHCC
>Mature Secondary Structure 
TPEQFEVKANPALWERLGMNVERFSGMPKMLTEAFRGIYLSQKNRPARMEYFDGMIAEL
CCCCEEEECCHHHHHHHCCCHHHHCCCHHHHHHHHHCEEECCCCCCCHHHHHHHHHHHH
HSGRVEELVTAKDAGRPVVGTFCVYVPEEVIMAVGGICVGLCGGSQGSIPDAEKVLPRNI
HCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHCCHHH
CPMVKSAFGFKLGKICPYFQAVDLVYGETTCDAKKKTWELLDREVPTHVMEIPQMKRARD
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KALWLEEVKDFTSKMEEVSGRKATAEGIGAAIRVMNAKRLALQRLNDLRHHTPSPISGKD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
MLLIQQIAFYDDPARFTANVNELCDELDERIAAGVAVAPAATPRVMVSGTPMALPNWKLH
HHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCEEECCCCCCEEEECCCCCCCCCHHHH
HLIESAGAVVVNEESCIGTRYYKDLTDESTATVDEQLSLLTDRYMKIDCSCFTPNDDRIE
HHHHHCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCHHHHH
QVLVEYRASGAQGLIDYCLQFCHTYNIEAVKLREMCEREGIPFLAIETDYSPEDVGQLQT
HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
RIEAFIEQIRG
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]