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The map label for this gene is secD [H]

Identifier: 39997711

GI number: 39997711

Start: 2887086

End: 2888687

Strand: Reverse

Name: secD [H]

Synonym: GSU2617

Alternate gene names: 39997711

Gene position: 2888687-2887086 (Counterclockwise)

Preceding gene: 39997712

Following gene: 39997710

Centisome position: 75.74

GC content: 62.23

Gene sequence:

>1602_bases
ATGTCCAAAGGGCTACTCTGGCGCTTCAGCCTCATTGCATTATTTATTACTCTGTCGCTTCTCTACCTGACCCCGACCCT
GGTGTCGCCGCTGCCGTCCTGGTGGAAGGGACTCCTTCCCAAGGACCGGATACACCTGGGACTCGACCTGCAGGGCGGGA
CGCATTTGGTCATGGAGGTGGAAACCCAGAAGGCCGTTGAGGGGACCCTGGACCTCATCGCCACCGACCTGGAGGATGCG
CTCTCGGCCAAGACGCTGCGGTACAAGCAGATCGCCCGTCAGGGGGGCGACCGGGTCGGCATGACTTTTTACGATCGCGG
GACCGCTGACGAGGCCCAGAAGCTTCTCAAGGACAAGTACCCGACCATGACGCTCGTCCCCCCCTATGACGAGGGGGGCT
TCGTGCACCTGCAGCTCCGGATGAACGAGAAGGAGGCCCAGGAGCGCAAGGACCGGGCCGTTGCCCAGGCCCTGGAAACC
ATCCGCAACCGGATTGACCAGTTCGGCGTTTCCGAGCCGGTCATTGCCCGCGAAGGACTCACCAACATCGTGGTCCAGCT
GCCGGGCATCAGCGACCCGAAGCGGGCCATCGAGCTCATCGGCCGCACGGCCCGCCTTGAGTTCAAGCTGGTGGACGAGA
CGGTCAATCCGGCCATCGCCACGCCGGGAACCATTCCCGAAGACACGGAAATCCTGATGGAGAAGCGGACCGATCCCACC
ACCGGGGCGGTCACCGAGATTCCGCTGGCGGTGAAGAAGAAGGCAATCATTACCGGTGATCTTCTCACCGATGCCCAGAT
CAGGATCGATTCCCAGTTCAACCAGCCCTACGTGGCCATCGAGTTCAACTCGACCGGCGCCCGGCTCTTCGACCAAGTGA
CCGCCGCCAACGTGGGCAAGCGCTTCGCCATCGTCCTTGACAACACCATCTACTCGGCCCCGGTCATCCGCGAGCGGATC
TCCGGCGGGAGCGCCCAGATCTCCGGCTCGTTCACCGAGAAGGAAGCGGCCGACCTGGCCATCGTGCTCCGGGCCGGTTC
CCTCCCCGCCCCGGTCAAGATCATCCAGAACGTGACGGTGGGTCCGTCCCTGGGTGAAGACTCCATCAACAAGGGACTCA
TGGCCGGCGCCATCGGCGTCGCGCTCGTGATCCTCTTCATGGGGATCTACTACAAGCTGTCGGGGATGGTGGCCAATTTC
GGGATGATTCTCAACGTCCTCTTCCTCATGGGGGCTCTGGCCGCCCTGGGGGCGACCCTCACCCTGCCCGGCATCGCCGC
CATCGTACTGCTGATCGGCATGTCGGTTGACGCCAACGTTCTGATCTTCGAACGGATACGGGAGGAACTGCGCCTTGGCA
AAACGCCGATTGCCGCCCTTGATTCAGGCTACGACAAGGCGTTCCTCACCATCATGGACTCCCACGTGACCACCCTTATA
ACCGCGGCGGTCCTCTTCCAGTTCGGCACCGGTCCGGTCAAGGGATTTGCCGTGTCGCTCAGTCTGGGGGTCATTATCAA
CCTCTTTACTGCCCTCGTCGGAACCAAGGCGATCTTCGATTTCGTCCTGAACCGTCTGCGGGTCAAGCGTCTGAGCGTCT
AG

Upstream 100 bases:

>100_bases
GTGAACCTCGAGATTGCACCTGGCGTCGTCATCAAGATCACCAAGGGATACGTCGCCAGCCTGAAGAAGGACTAAGGATC
CATCGAAAGGAGCTTCGCTC

Downstream 100 bases:

>100_bases
GGGGCATCATGCAAATAATCGGCAAAACAAATTTCGATTTCATGGGCAAAAAGAAGATCACGTTCGTGATCTCTTCCATC
ATCGCATTGCTCGGACTGAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MSKGLLWRFSLIALFITLSLLYLTPTLVSPLPSWWKGLLPKDRIHLGLDLQGGTHLVMEVETQKAVEGTLDLIATDLEDA
LSAKTLRYKQIARQGGDRVGMTFYDRGTADEAQKLLKDKYPTMTLVPPYDEGGFVHLQLRMNEKEAQERKDRAVAQALET
IRNRIDQFGVSEPVIAREGLTNIVVQLPGISDPKRAIELIGRTARLEFKLVDETVNPAIATPGTIPEDTEILMEKRTDPT
TGAVTEIPLAVKKKAIITGDLLTDAQIRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGKRFAIVLDNTIYSAPVIRERI
SGGSAQISGSFTEKEAADLAIVLRAGSLPAPVKIIQNVTVGPSLGEDSINKGLMAGAIGVALVILFMGIYYKLSGMVANF
GMILNVLFLMGALAALGATLTLPGIAAIVLLIGMSVDANVLIFERIREELRLGKTPIAALDSGYDKAFLTIMDSHVTTLI
TAAVLFQFGTGPVKGFAVSLSLGVIINLFTALVGTKAIFDFVLNRLRVKRLSV

Sequences:

>Translated_533_residues
MSKGLLWRFSLIALFITLSLLYLTPTLVSPLPSWWKGLLPKDRIHLGLDLQGGTHLVMEVETQKAVEGTLDLIATDLEDA
LSAKTLRYKQIARQGGDRVGMTFYDRGTADEAQKLLKDKYPTMTLVPPYDEGGFVHLQLRMNEKEAQERKDRAVAQALET
IRNRIDQFGVSEPVIAREGLTNIVVQLPGISDPKRAIELIGRTARLEFKLVDETVNPAIATPGTIPEDTEILMEKRTDPT
TGAVTEIPLAVKKKAIITGDLLTDAQIRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGKRFAIVLDNTIYSAPVIRERI
SGGSAQISGSFTEKEAADLAIVLRAGSLPAPVKIIQNVTVGPSLGEDSINKGLMAGAIGVALVILFMGIYYKLSGMVANF
GMILNVLFLMGALAALGATLTLPGIAAIVLLIGMSVDANVLIFERIREELRLGKTPIAALDSGYDKAFLTIMDSHVTTLI
TAAVLFQFGTGPVKGFAVSLSLGVIINLFTALVGTKAIFDFVLNRLRVKRLSV
>Mature_532_residues
SKGLLWRFSLIALFITLSLLYLTPTLVSPLPSWWKGLLPKDRIHLGLDLQGGTHLVMEVETQKAVEGTLDLIATDLEDAL
SAKTLRYKQIARQGGDRVGMTFYDRGTADEAQKLLKDKYPTMTLVPPYDEGGFVHLQLRMNEKEAQERKDRAVAQALETI
RNRIDQFGVSEPVIAREGLTNIVVQLPGISDPKRAIELIGRTARLEFKLVDETVNPAIATPGTIPEDTEILMEKRTDPTT
GAVTEIPLAVKKKAIITGDLLTDAQIRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGKRFAIVLDNTIYSAPVIRERIS
GGSAQISGSFTEKEAADLAIVLRAGSLPAPVKIIQNVTVGPSLGEDSINKGLMAGAIGVALVILFMGIYYKLSGMVANFG
MILNVLFLMGALAALGATLTLPGIAAIVLLIGMSVDANVLIFERIREELRLGKTPIAALDSGYDKAFLTIMDSHVTTLIT
AAVLFQFGTGPVKGFAVSLSLGVIINLFTALVGTKAIFDFVLNRLRVKRLSV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=536, Percent_Identity=36.5671641791045, Blast_Score=336, Evalue=2e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57759; Mature: 57628

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGLLWRFSLIALFITLSLLYLTPTLVSPLPSWWKGLLPKDRIHLGLDLQGGTHLVMEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCEEEEEE
ETQKAVEGTLDLIATDLEDALSAKTLRYKQIARQGGDRVGMTFYDRGTADEAQKLLKDKY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECEEEECCCCHHHHHHHHHHCC
PTMTLVPPYDEGGFVHLQLRMNEKEAQERKDRAVAQALETIRNRIDQFGVSEPVIAREGL
CCEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCH
TNIVVQLPGISDPKRAIELIGRTARLEFKLVDETVNPAIATPGTIPEDTEILMEKRTDPT
HEEEEECCCCCCHHHHHHHHCCHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCC
TGAVTEIPLAVKKKAIITGDLLTDAQIRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGK
CCCHHHCCHHHHCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCC
RFAIVLDNTIYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVKIIQNVTV
EEEEEECCCHHCCHHHHHHHCCCCEEECCCCCHHHHCCEEEEEECCCCCCCHHHHHCCCC
GPSLGEDSINKGLMAGAIGVALVILFMGIYYKLSGMVANFGMILNVLFLMGALAALGATL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TLPGIAAIVLLIGMSVDANVLIFERIREELRLGKTPIAALDSGYDKAFLTIMDSHVTTLI
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEHHHHHHHHHHH
TAAVLFQFGTGPVKGFAVSLSLGVIINLFTALVGTKAIFDFVLNRLRVKRLSV
HHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKGLLWRFSLIALFITLSLLYLTPTLVSPLPSWWKGLLPKDRIHLGLDLQGGTHLVMEV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCEEEEEE
ETQKAVEGTLDLIATDLEDALSAKTLRYKQIARQGGDRVGMTFYDRGTADEAQKLLKDKY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECEEEECCCCHHHHHHHHHHCC
PTMTLVPPYDEGGFVHLQLRMNEKEAQERKDRAVAQALETIRNRIDQFGVSEPVIAREGL
CCEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCH
TNIVVQLPGISDPKRAIELIGRTARLEFKLVDETVNPAIATPGTIPEDTEILMEKRTDPT
HEEEEECCCCCCHHHHHHHHCCHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCC
TGAVTEIPLAVKKKAIITGDLLTDAQIRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGK
CCCHHHCCHHHHCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCC
RFAIVLDNTIYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVKIIQNVTV
EEEEEECCCHHCCHHHHHHHCCCCEEECCCCCHHHHCCEEEEEECCCCCCCHHHHHCCCC
GPSLGEDSINKGLMAGAIGVALVILFMGIYYKLSGMVANFGMILNVLFLMGALAALGATL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TLPGIAAIVLLIGMSVDANVLIFERIREELRLGKTPIAALDSGYDKAFLTIMDSHVTTLI
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEHHHHHHHHHHH
TAAVLFQFGTGPVKGFAVSLSLGVIINLFTALVGTKAIFDFVLNRLRVKRLSV
HHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA