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The map label for this gene is secF [H]

Identifier: 39997710

GI number: 39997710

Start: 2886169

End: 2887077

Strand: Reverse

Name: secF [H]

Synonym: GSU2616

Alternate gene names: 39997710

Gene position: 2887077-2886169 (Counterclockwise)

Preceding gene: 39997711

Following gene: 39997709

Centisome position: 75.69

GC content: 58.53

Gene sequence:

>909_bases
ATGCAAATAATCGGCAAAACAAATTTCGATTTCATGGGCAAAAAGAAGATCACGTTCGTGATCTCTTCCATCATCGCATT
GCTCGGACTGATCGGCGTCGGACAGATTGCCCTGGGAACCGCCAACATGGGGATCGATTTTTCCGGCGGCACCGCGGTCC
AGCTCAACTTCAGCCAGCCGGTAGCCATCGACCAGGCCCGGCACGCCTTGGCCAAGCACGGTTTCAAGGACGCCAACCTT
CAGGAGGTTTCCGGGGGCAACAAGCTTCTCGTCAAGGTCGGCAAGGCCACCCACGTTCAGGGGCCGGCAGCCGACGCCAT
CGAAGATGCCTTCCGGAAGGAGTTCACCGACAACCGGTTCGTGATCGAGAGCTCCACGGAGATCGGCCCGGCCATCGGCG
ACAAGCTCCGCAAGGACACCCTCGTGGCAGTGGTCATTTCACTGGTGGGCATTGTCATCTACATCGCCTGGCGCTTCGAC
TTCGCCTTCGGCGTGGGTGCCCTGGCGGCGACCCTTCACGACGTGCTGGCCATGTTTGCCGTCTTCTTCGTCATGCAGAA
GGAGATCAACCTGCTCTTCATCACGGCGGTGCTCACCATTGCCGGCTACTCGCTGACCGATACGGTGGTCGTCTTCGACC
GGATCAGGGAAAACCTGCACAAGAACGTCAAGGATTCCCTGACGGCAATCTGCAACTTCAGCATCAACGAGGTCCTTTCC
CGGACAATCATTACCGCCCTGACCACGTTCCTGGCGACCGCCTCGCTCTTTTTCTTCGGTGGCGAGGTGATTCACGACTT
CGCCTTCGCGCTGCTGGTGGGCATCATCGTCGGTGTATATTCATCCGTGTTCGTGGCGAGCCCCATTGTCGTGATCTGGG
GGTCGCGGAACAAGGAAACCAAGGCCTAG

Upstream 100 bases:

>100_bases
TCATTATCAACCTCTTTACTGCCCTCGTCGGAACCAAGGCGATCTTCGATTTCGTCCTGAACCGTCTGCGGGTCAAGCGT
CTGAGCGTCTAGGGGGCATC

Downstream 100 bases:

>100_bases
GGGGAGACAGTATATGAACAAGGAAACCTTGCTTGCCGCAGTTGTGGCTCTCGTCGTGGGACTCCTGGGCGGTTACCTGG
TGTTCAGCATCAGTGGGTCC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQIIGKTNFDFMGKKKITFVISSIIALLGLIGVGQIALGTANMGIDFSGGTAVQLNFSQPVAIDQARHALAKHGFKDANL
QEVSGGNKLLVKVGKATHVQGPAADAIEDAFRKEFTDNRFVIESSTEIGPAIGDKLRKDTLVAVVISLVGIVIYIAWRFD
FAFGVGALAATLHDVLAMFAVFFVMQKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKNVKDSLTAICNFSINEVLS
RTIITALTTFLATASLFFFGGEVIHDFAFALLVGIIVGVYSSVFVASPIVVIWGSRNKETKA

Sequences:

>Translated_302_residues
MQIIGKTNFDFMGKKKITFVISSIIALLGLIGVGQIALGTANMGIDFSGGTAVQLNFSQPVAIDQARHALAKHGFKDANL
QEVSGGNKLLVKVGKATHVQGPAADAIEDAFRKEFTDNRFVIESSTEIGPAIGDKLRKDTLVAVVISLVGIVIYIAWRFD
FAFGVGALAATLHDVLAMFAVFFVMQKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKNVKDSLTAICNFSINEVLS
RTIITALTTFLATASLFFFGGEVIHDFAFALLVGIIVGVYSSVFVASPIVVIWGSRNKETKA
>Mature_302_residues
MQIIGKTNFDFMGKKKITFVISSIIALLGLIGVGQIALGTANMGIDFSGGTAVQLNFSQPVAIDQARHALAKHGFKDANL
QEVSGGNKLLVKVGKATHVQGPAADAIEDAFRKEFTDNRFVIESSTEIGPAIGDKLRKDTLVAVVISLVGIVIYIAWRFD
FAFGVGALAATLHDVLAMFAVFFVMQKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKNVKDSLTAICNFSINEVLS
RTIITALTTFLATASLFFFGGEVIHDFAFALLVGIIVGVYSSVFVASPIVVIWGSRNKETKA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=298, Percent_Identity=29.8657718120805, Blast_Score=161, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 32536; Mature: 32536

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIIGKTNFDFMGKKKITFVISSIIALLGLIGVGQIALGTANMGIDFSGGTAVQLNFSQP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEECCCCCEEECCCEEEEEECCCC
VAIDQARHALAKHGFKDANLQEVSGGNKLLVKVGKATHVQGPAADAIEDAFRKEFTDNRF
CHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEE
VIESSTEIGPAIGDKLRKDTLVAVVISLVGIVIYIAWRFDFAFGVGALAATLHDVLAMFA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFFVMQKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKNVKDSLTAICNFSINEVLS
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RTIITALTTFLATASLFFFGGEVIHDFAFALLVGIIVGVYSSVFVASPIVVIWGSRNKET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
KA
CC
>Mature Secondary Structure
MQIIGKTNFDFMGKKKITFVISSIIALLGLIGVGQIALGTANMGIDFSGGTAVQLNFSQP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEECCCCCEEECCCEEEEEECCCC
VAIDQARHALAKHGFKDANLQEVSGGNKLLVKVGKATHVQGPAADAIEDAFRKEFTDNRF
CHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEE
VIESSTEIGPAIGDKLRKDTLVAVVISLVGIVIYIAWRFDFAFGVGALAATLHDVLAMFA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFFVMQKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKNVKDSLTAICNFSINEVLS
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RTIITALTTFLATASLFFFGGEVIHDFAFALLVGIIVGVYSSVFVASPIVVIWGSRNKET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
KA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA