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The map label for this gene is ybgF [C]

Identifier: 39997647

GI number: 39997647

Start: 2814839

End: 2815567

Strand: Reverse

Name: ybgF [C]

Synonym: GSU2552

Alternate gene names: 39997647

Gene position: 2815567-2814839 (Counterclockwise)

Preceding gene: 39997654

Following gene: 39997646

Centisome position: 73.82

GC content: 66.39

Gene sequence:

>729_bases
ATGAACCTGCTCAGACACGCTGTTGCCGGACTTTGCCTCGTGGCGTCCGCCGGTTGCAGCGGCCAGGATGTGATGGTACG
GAAGCAGTCGGAGATGGAGACGCGCCTGGAGCACCTGCATCAGGCCAGCACCACCTCCGGCGTGCGCCTCGCCGAACTTT
CGGCCGAGGTGACCGCGCTCCGCGAGCGCCTGGCCGCCCAGGGCGCCGAGCTCGAGCAGATCAAGGCCGGACAGCGGGAA
CTGCAGGCGAACATCACCGAACGTCTCGCCCAGGTTGCCCCCGCGGCCGGTACCCCATCCCGCATCGAGGTGGTGAGCCG
AGACGGCGCGCCCCGTGAAAAGGACGGCCCCCCCGATGCTTACCTGAAGGCCTTCGGCCTCTACAGCGCCAACAACTTCG
CCGGCGCCGTGGAGGCGTTTCAGGCATTCCTTGCGGAACATCCCGACAGCGAGTATGCGGGCAATGCCCTCTACTGGATC
GGCGAATGCCACTATTCGCGCTCCGACCTGCCCCGGGCGCTGGATGCCTTCAGATTGGTGGCCGAGCGCTATCCCGCGAG
CACTAAGGTCCCCGATGCTCTCCTCAAGAGCGGCTACACGCTCTATGCCATGAAGGAGCCTGAGCGGGCCCGGGAGATCC
TCGAATCGCTCGCCGCCAAGTATCCCCGGAGCCCCGCTGCGGCCAAGGCCCGCGAACGCCTCGCTGTTGCGACTCCGAAA
AAACAGTGA

Upstream 100 bases:

>100_bases
AATATATTCATGTAACGCGTGATTCCGGTCACGGCTTTGACCTTGACAAACAAGGGGAAATGTCATTAACTCTCCGAAGA
GTTCACTAGGGAGAGGGTCC

Downstream 100 bases:

>100_bases
TTCCGTACCCATGCCGGCGTTCGCCCCGCCGGCGCATCAGGTGCCCCTTTACGGACGGGGCCGCGAGGTGACCATGAAAC
GGATGCTGGCTGCTTCCCTC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MNLLRHAVAGLCLVASAGCSGQDVMVRKQSEMETRLEHLHQASTTSGVRLAELSAEVTALRERLAAQGAELEQIKAGQRE
LQANITERLAQVAPAAGTPSRIEVVSRDGAPREKDGPPDAYLKAFGLYSANNFAGAVEAFQAFLAEHPDSEYAGNALYWI
GECHYSRSDLPRALDAFRLVAERYPASTKVPDALLKSGYTLYAMKEPERAREILESLAAKYPRSPAAAKARERLAVATPK
KQ

Sequences:

>Translated_242_residues
MNLLRHAVAGLCLVASAGCSGQDVMVRKQSEMETRLEHLHQASTTSGVRLAELSAEVTALRERLAAQGAELEQIKAGQRE
LQANITERLAQVAPAAGTPSRIEVVSRDGAPREKDGPPDAYLKAFGLYSANNFAGAVEAFQAFLAEHPDSEYAGNALYWI
GECHYSRSDLPRALDAFRLVAERYPASTKVPDALLKSGYTLYAMKEPERAREILESLAAKYPRSPAAAKARERLAVATPK
KQ
>Mature_242_residues
MNLLRHAVAGLCLVASAGCSGQDVMVRKQSEMETRLEHLHQASTTSGVRLAELSAEVTALRERLAAQGAELEQIKAGQRE
LQANITERLAQVAPAAGTPSRIEVVSRDGAPREKDGPPDAYLKAFGLYSANNFAGAVEAFQAFLAEHPDSEYAGNALYWI
GECHYSRSDLPRALDAFRLVAERYPASTKVPDALLKSGYTLYAMKEPERAREILESLAAKYPRSPAAAKARERLAVATPK
KQ

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=99, Percent_Identity=34.3434343434343, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26293; Mature: 26293

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLRHAVAGLCLVASAGCSGQDVMVRKQSEMETRLEHLHQASTTSGVRLAELSAEVTAL
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
RERLAAQGAELEQIKAGQRELQANITERLAQVAPAAGTPSRIEVVSRDGAPREKDGPPDA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCCCCCHHH
YLKAFGLYSANNFAGAVEAFQAFLAEHPDSEYAGNALYWIGECHYSRSDLPRALDAFRLV
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
AERYPASTKVPDALLKSGYTLYAMKEPERAREILESLAAKYPRSPAAAKARERLAVATPK
HHHCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
KQ
CC
>Mature Secondary Structure
MNLLRHAVAGLCLVASAGCSGQDVMVRKQSEMETRLEHLHQASTTSGVRLAELSAEVTAL
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
RERLAAQGAELEQIKAGQRELQANITERLAQVAPAAGTPSRIEVVSRDGAPREKDGPPDA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCCCCCHHH
YLKAFGLYSANNFAGAVEAFQAFLAEHPDSEYAGNALYWIGECHYSRSDLPRALDAFRLV
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
AERYPASTKVPDALLKSGYTLYAMKEPERAREILESLAAKYPRSPAAAKARERLAVATPK
HHHCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
KQ
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]