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The map label for this gene is (hspc4-1 [H]

Identifier: 39997503

GI number: 39997503

Start: 2642563

End: 2643045

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: GSU2408

Alternate gene names: 39997503

Gene position: 2643045-2642563 (Counterclockwise)

Preceding gene: 39997504

Following gene: 39997502

Centisome position: 69.3

GC content: 56.11

Gene sequence:

>483_bases
ATGTCAAGCCTGTTGCCTGAGAAGTGGGGTGAGGCGCTGGAACGGGTTCATGACAAAGTCGGCCATTTCCTGACCAGGGT
GATGCCGTGGAAAAAGCAGGAACATTTTCCGGAGCGGATCACGGCCGATACCTTGCCAGCCTTCATGCAGTCTGGTGGCC
CGCTGCTCGACATGCATGAGACCGCTGATGAACTGATCATCAGGGCAGAAGTGCCGGGTCTGAAGAACGATGATTTCTCG
GTCGGGATTGTCGGCAGACGGTTAACAATAAAAGGAGAAAAGAATATCGTTCGTGAGCGGAAAGGAGGTGATGGGTGCCT
TATTTCAGAATGCCGATACGGCAGCTTCGCCAGAACTCTCCAGTTGCCGTACGAAATCGATGAGAAGGCGATTGCGGCGG
ACCTCAAGCACGGGGTCCTGACCATCCGGCTCCCCAAGCCGGAGAAAGGACGGCATGCCCGCTACCGGGTGCCGATCTCC
TGA

Upstream 100 bases:

>100_bases
TGACTCTGCGGGTGCCAAAGGCGGAAGCCGCCAAGCCAAAACGGATCGCCGTACAGGTCGGCTGAAAAAGCAAAAGGAGT
CTGAACAGGAGGTGATCACA

Downstream 100 bases:

>100_bases
AACAGCAGGGATGTCGTGAGGGCCGCTTGGTGCGGCCCTCACCGGTTCTATGCGAAAAGGATCTTATTCTTTCTTGCAGG
CACGGAGGAAGGATAGATGA

Product: HSP20 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSSLLPEKWGEALERVHDKVGHFLTRVMPWKKQEHFPERITADTLPAFMQSGGPLLDMHETADELIIRAEVPGLKNDDFS
VGIVGRRLTIKGEKNIVRERKGGDGCLISECRYGSFARTLQLPYEIDEKAIAADLKHGVLTIRLPKPEKGRHARYRVPIS

Sequences:

>Translated_160_residues
MSSLLPEKWGEALERVHDKVGHFLTRVMPWKKQEHFPERITADTLPAFMQSGGPLLDMHETADELIIRAEVPGLKNDDFS
VGIVGRRLTIKGEKNIVRERKGGDGCLISECRYGSFARTLQLPYEIDEKAIAADLKHGVLTIRLPKPEKGRHARYRVPIS
>Mature_159_residues
SSLLPEKWGEALERVHDKVGHFLTRVMPWKKQEHFPERITADTLPAFMQSGGPLLDMHETADELIIRAEVPGLKNDDFSV
GIVGRRLTIKGEKNIVRERKGGDGCLISECRYGSFARTLQLPYEIDEKAIAADLKHGVLTIRLPKPEKGRHARYRVPIS

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 18096; Mature: 17965

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLPEKWGEALERVHDKVGHFLTRVMPWKKQEHFPERITADTLPAFMQSGGPLLDMHE
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHCCCCEEEHHH
TADELIIRAEVPGLKNDDFSVGIVGRRLTIKGEKNIVRERKGGDGCLISECRYGSFARTL
CHHHEEEEECCCCCCCCCEEEEEECEEEEECCCHHHHHHCCCCCCEEEECCCCCCCHHEE
QLPYEIDEKAIAADLKHGVLTIRLPKPEKGRHARYRVPIS
ECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCEEECCCC
>Mature Secondary Structure 
SSLLPEKWGEALERVHDKVGHFLTRVMPWKKQEHFPERITADTLPAFMQSGGPLLDMHE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHCCCCEEEHHH
TADELIIRAEVPGLKNDDFSVGIVGRRLTIKGEKNIVRERKGGDGCLISECRYGSFARTL
CHHHEEEEECCCCCCCCCEEEEEECEEEEECCCHHHHHHCCCCCCEEEECCCCCCCHHEE
QLPYEIDEKAIAADLKHGVLTIRLPKPEKGRHARYRVPIS
ECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA