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The map label for this gene is yagI [H]

Identifier: 39997450

GI number: 39997450

Start: 2574831

End: 2575607

Strand: Reverse

Name: yagI [H]

Synonym: GSU2354

Alternate gene names: 39997450

Gene position: 2575607-2574831 (Counterclockwise)

Preceding gene: 39997451

Following gene: 39997449

Centisome position: 67.53

GC content: 59.33

Gene sequence:

>777_bases
ATGCGACACGACAAATTCGCAGGACCTGCCTACACGATACAGATTGTCAGCAATGCGCTCGACATGCTTGAACTGCTGGC
CATGCGGCCGGCTAATCCGTCGCTTGGAAGGCTCGCCGGATCGCTCAACCTGACCAGAAACAAGGCATATCGGCTTCTTT
CTACCCTGTGCGAACGTGGCCTTGTGGAGCAGGACCCGGAAACCGGCACCTATGCGATTGGCGTTGCGGCGTTGGAACTG
GCCCAGAGGCTCATTCGCCAGGCCCCTGTCGTGAACCATGCCCATCCGATCATGGAGGAACTGGCGAGAAAGCATGACGA
AGCCGTCTATATGACCGTTCTGCGGGGCGATGACGTTGTGTTTCTCGACATGGTCGACTGTGAGCGTCAAGTGAAGGCCA
CGCCTCTCATCGGCAGGCGTTTCCCCTATTTCACGAACGCGGCCGGCAAAGCCATCAAGGCTCTTGAGGGCGCCGACCCG
TTGAATCTTTTAAAGAAGCGCGGCAGGAAAAACAATTCGCTTGATGTGGGATCGTTGCTGAGTGAACTGCACGAGATCCG
ACACAAGGGCGTGGCCGTCGACTGCGGTGGGCTCGGGGACGGGATCGTGAGCGTTGCCGTGGCAGTGCGGGACTATGCCG
GGAAAGTGGTCGGAGCGATCACGATGCTCGTGCCATCGTTCAGGGCTGTGGCCGACCGGCTGGAGAGCGAGATTATCCCC
TCTCTGCAGGAAGGGGCCGACCTGCTCTCGATGAAGCTGGGGCACGGACCATGCTGA

Upstream 100 bases:

>100_bases
GGTGTTCCTTTCCGGTTCTGACCGGGTGCATCAAGGAATGCGCTCTGCACTGCCCGGGTTAAGAATCCGTCAATTTCACG
AAAGAGTGAGGTGAGCATGT

Downstream 100 bases:

>100_bases
AGGCCACGCCAGATATCGCGAAAGGAGGTGGTGGAGCGCCAACGACAACAATGGGGGAGCGGGACGCCGCTTCATTATCC
ATGAACACACAAGGAAAGGA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MRHDKFAGPAYTIQIVSNALDMLELLAMRPANPSLGRLAGSLNLTRNKAYRLLSTLCERGLVEQDPETGTYAIGVAALEL
AQRLIRQAPVVNHAHPIMEELARKHDEAVYMTVLRGDDVVFLDMVDCERQVKATPLIGRRFPYFTNAAGKAIKALEGADP
LNLLKKRGRKNNSLDVGSLLSELHEIRHKGVAVDCGGLGDGIVSVAVAVRDYAGKVVGAITMLVPSFRAVADRLESEIIP
SLQEGADLLSMKLGHGPC

Sequences:

>Translated_258_residues
MRHDKFAGPAYTIQIVSNALDMLELLAMRPANPSLGRLAGSLNLTRNKAYRLLSTLCERGLVEQDPETGTYAIGVAALEL
AQRLIRQAPVVNHAHPIMEELARKHDEAVYMTVLRGDDVVFLDMVDCERQVKATPLIGRRFPYFTNAAGKAIKALEGADP
LNLLKKRGRKNNSLDVGSLLSELHEIRHKGVAVDCGGLGDGIVSVAVAVRDYAGKVVGAITMLVPSFRAVADRLESEIIP
SLQEGADLLSMKLGHGPC
>Mature_258_residues
MRHDKFAGPAYTIQIVSNALDMLELLAMRPANPSLGRLAGSLNLTRNKAYRLLSTLCERGLVEQDPETGTYAIGVAALEL
AQRLIRQAPVVNHAHPIMEELARKHDEAVYMTVLRGDDVVFLDMVDCERQVKATPLIGRRFPYFTNAAGKAIKALEGADP
LNLLKKRGRKNNSLDVGSLLSELHEIRHKGVAVDCGGLGDGIVSVAVAVRDYAGKVVGAITMLVPSFRAVADRLESEIIP
SLQEGADLLSMKLGHGPC

Specific function: Transcriptional Regulator Of The Kdgk Gene For The Kdg Kinase And The Kdgt Gene For The Kdg Permease. [C]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788131, Length=247, Percent_Identity=25.1012145748988, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1786468, Length=249, Percent_Identity=26.1044176706827, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786715, Length=229, Percent_Identity=26.2008733624454, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87082359, Length=231, Percent_Identity=26.8398268398268, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789999, Length=249, Percent_Identity=22.4899598393574, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27943; Mature: 27943

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHDKFAGPAYTIQIVSNALDMLELLAMRPANPSLGRLAGSLNLTRNKAYRLLSTLCERG
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCC
LVEQDPETGTYAIGVAALELAQRLIRQAPVVNHAHPIMEELARKHDEAVYMTVLRGDDVV
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCEE
FLDMVDCERQVKATPLIGRRFPYFTNAAGKAIKALEGADPLNLLKKRGRKNNSLDVGSLL
EEEECCCHHHHHCCCCCCCCCCCHHCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHH
SELHEIRHKGVAVDCGGLGDGIVSVAVAVRDYAGKVVGAITMLVPSFRAVADRLESEIIP
HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLQEGADLLSMKLGHGPC
CHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRHDKFAGPAYTIQIVSNALDMLELLAMRPANPSLGRLAGSLNLTRNKAYRLLSTLCERG
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCC
LVEQDPETGTYAIGVAALELAQRLIRQAPVVNHAHPIMEELARKHDEAVYMTVLRGDDVV
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCEE
FLDMVDCERQVKATPLIGRRFPYFTNAAGKAIKALEGADPLNLLKKRGRKNNSLDVGSLL
EEEECCCHHHHHCCCCCCCCCCCHHCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHH
SELHEIRHKGVAVDCGGLGDGIVSVAVAVRDYAGKVVGAITMLVPSFRAVADRLESEIIP
HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLQEGADLLSMKLGHGPC
CHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]