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The map label for this gene is ydhO [H]

Identifier: 39997375

GI number: 39997375

Start: 2493555

End: 2494358

Strand: Reverse

Name: ydhO [H]

Synonym: GSU2277

Alternate gene names: 39997375

Gene position: 2494358-2493555 (Counterclockwise)

Preceding gene: 39997377

Following gene: 39997374

Centisome position: 65.4

GC content: 63.93

Gene sequence:

>804_bases
ATGGCAAAAAAACTAACACTTTTCCTCGTGTTTGTCGCAGTGGCCTTCGTGACGGCCACGGGCTGCGCCACGCCCCGGGC
GGGTCTCTCCCGCGTGGGCCATGCCATCCAGGTGGGGGCCTTCTCCGACGTGAAGAACGCCGAGCGTCTTACGGCAAGGC
TTCAGGTTCGCGGGATCGATGCATTCTATTTCAAGCGTGACAACGGCCTCTACGCGGTCCGCTTCGGCGACTTTCCTTCC
CGAGAGGCTGCCCGGAGGGAGGCCCGCAGGCTGGTAGCCGACGGCATGATCGGATCCTACTTCATCGCCTCACCGGAAAA
CCTGCCCGTCGCGAAACGCGAAACGGTCATCCGCAAGGAGCCGGCTACGATCATTAGCCGGCCTAAGTCCGACCAGCCCC
GCAGCCGGCCCGACAACGACCGGGGCAGCCGGGACATGGGGGCCATTGCCGCCCGCACCGCGGAGCGGTTCGTTGGCATC
CCTTACCGCTGGGGCGGGGATACCGTCGTGGACGGGATGGACTGCAGCGGGTTCGTCAGGGCCGTGTACAACCTCTGCGG
GGTCAACATTCCCCGCACCTCCCGCGAGCAGTTCAAGGTGGGAGACCCGATCGGGCGCGAAGACCTGCGTGACGGCGATC
TGGTTTTCTTCGGCGCCTCAGATGACAGCATCAACCATGTGGGAATCTACGTGGGAGACGGCCGGTTCGTCCATGCCCCC
CGTCGAGGGGACGACATCAAAGTCTCCTCCCTGGACGAGAACTATTTCACCACCCGCTTCATGGGCGGGCGGCGCTACTT
CTAA

Upstream 100 bases:

>100_bases
CAACCCCGACGCGGTCCTGGACGGTGCACTGGAGGATTTCGTTGTAGCGTTCCTCATGGGGGTGCGGCGCGATGTGAAAG
ACTCCGACGAGTAAGGTGCG

Downstream 100 bases:

>100_bases
TTTATCGAGGTAACCATGGCTCTGATCAAGCCGTTTCGGGCGCTCCGCCCGCCGAAGCACCTGGCTGAGAAGGTGGCCGC
GCTTCCCTACGACGTCATGA

Product: NLP/P60 family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MAKKLTLFLVFVAVAFVTATGCATPRAGLSRVGHAIQVGAFSDVKNAERLTARLQVRGIDAFYFKRDNGLYAVRFGDFPS
REAARREARRLVADGMIGSYFIASPENLPVAKRETVIRKEPATIISRPKSDQPRSRPDNDRGSRDMGAIAARTAERFVGI
PYRWGGDTVVDGMDCSGFVRAVYNLCGVNIPRTSREQFKVGDPIGREDLRDGDLVFFGASDDSINHVGIYVGDGRFVHAP
RRGDDIKVSSLDENYFTTRFMGGRRYF

Sequences:

>Translated_267_residues
MAKKLTLFLVFVAVAFVTATGCATPRAGLSRVGHAIQVGAFSDVKNAERLTARLQVRGIDAFYFKRDNGLYAVRFGDFPS
REAARREARRLVADGMIGSYFIASPENLPVAKRETVIRKEPATIISRPKSDQPRSRPDNDRGSRDMGAIAARTAERFVGI
PYRWGGDTVVDGMDCSGFVRAVYNLCGVNIPRTSREQFKVGDPIGREDLRDGDLVFFGASDDSINHVGIYVGDGRFVHAP
RRGDDIKVSSLDENYFTTRFMGGRRYF
>Mature_266_residues
AKKLTLFLVFVAVAFVTATGCATPRAGLSRVGHAIQVGAFSDVKNAERLTARLQVRGIDAFYFKRDNGLYAVRFGDFPSR
EAARREARRLVADGMIGSYFIASPENLPVAKRETVIRKEPATIISRPKSDQPRSRPDNDRGSRDMGAIAARTAERFVGIP
YRWGGDTVVDGMDCSGFVRAVYNLCGVNIPRTSREQFKVGDPIGREDLRDGDLVFFGASDDSINHVGIYVGDGRFVHAPR
RGDDIKVSSLDENYFTTRFMGGRRYF

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=112, Percent_Identity=44.6428571428571, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786421, Length=126, Percent_Identity=37.3015873015873, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788501, Length=112, Percent_Identity=41.0714285714286, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788001, Length=137, Percent_Identity=35.7664233576642, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 29600; Mature: 29469

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKLTLFLVFVAVAFVTATGCATPRAGLSRVGHAIQVGAFSDVKNAERLTARLQVRGID
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEECCCHHHHHHHHHEEEEEEECCE
AFYFKRDNGLYAVRFGDFPSREAARREARRLVADGMIGSYFIASPENLPVAKRETVIRKE
EEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCC
PATIISRPKSDQPRSRPDNDRGSRDMGAIAARTAERFVGIPYRWGGDTVVDGMDCSGFVR
CHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCEECCCCCHHHHH
AVYNLCGVNIPRTSREQFKVGDPIGREDLRDGDLVFFGASDDSINHVGIYVGDGRFVHAP
HHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCEEEECC
RRGDDIKVSSLDENYFTTRFMGGRRYF
CCCCCEEEEECCCCCEEEEECCCCCCC
>Mature Secondary Structure 
AKKLTLFLVFVAVAFVTATGCATPRAGLSRVGHAIQVGAFSDVKNAERLTARLQVRGID
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEECCCHHHHHHHHHEEEEEEECCE
AFYFKRDNGLYAVRFGDFPSREAARREARRLVADGMIGSYFIASPENLPVAKRETVIRKE
EEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCC
PATIISRPKSDQPRSRPDNDRGSRDMGAIAARTAERFVGIPYRWGGDTVVDGMDCSGFVR
CHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCEECCCCCHHHHH
AVYNLCGVNIPRTSREQFKVGDPIGREDLRDGDLVFFGASDDSINHVGIYVGDGRFVHAP
HHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCEEEECC
RRGDDIKVSSLDENYFTTRFMGGRRYF
CCCCCEEEEECCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]