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The map label for this gene is yibD [C]

Identifier: 39997059

GI number: 39997059

Start: 2149898

End: 2150785

Strand: Reverse

Name: yibD [C]

Synonym: GSU1961

Alternate gene names: 39997059

Gene position: 2150785-2149898 (Counterclockwise)

Preceding gene: 39997060

Following gene: 39997058

Centisome position: 56.39

GC content: 55.29

Gene sequence:

>888_bases
ATGAAACAGCCAAAAGTCAGCGTCATTGTTACTTGTTACAATTACGCCACGTATCTGGAAGGGTGCCTGGCGTCCATTCT
CAACCAGACCTATCAGGACTTCGAACTGGTGATCATCAACGACGGCTCCACCGATAACACCGACGAGGTTATCTCCAGGT
TCCTCGATAATGACAAAGTCAGATACATCAACCAGAAGAACACCGGCCAAGCCATTGCCACCAACAACGGTATTGCGGCC
GCCGCCGGAGAGTTGATTGCCTTTCTGGACGCGGACGATCTGTGGGAGCCCACCAAGCTTGAGAAACAGGTCCGCCTGTT
CAACCGCGATTCCATCGGCGTGGTCTACAGCCGCATCAGATTCATGGACGCGGAGGGGTGTACCCTTGATATGCAACTGG
AGGGCAAATACTACACCCCCCGTTCCGGCCGCGTGACAGATGCCCTCCTGTTCGAAAACTTCATTCCCTACTCATCCACC
GTGGTGCGCAAGGAGTGTTTCGACAAATTCGGGATGTTCAACCCCGAATACAAGAACGGCCTCGATTGGGACCTGTGGCT
GCGGATATCCCGGGAGTACGAATTCGACTTTGTGGACGAGTACCTGCTCATCTACCGGATCGGTCACCCGGGGCAGCTGA
CCTCCAATGTGGAGCGGAGCGTTCGGTGCGCGGATCTGATTTTCGACCGCTTTCTCGAAGAAAACCCCGGCATCGTTCCT
GACAGCGTGGTCAGGAAGGCCATGGCCTATTCCTACTGCCGGCGGGGCAATCAGTTCCGGAAGATCGACCGCAAACGGTC
CAACGGTTTCTTTCTGAACGCGTTGGCCAAGAACCCGGCCGAAATCGGAGCCTACGTGGGGCTGGTGAAGAACTTCCTCA
ACATGTAG

Upstream 100 bases:

>100_bases
CTGTTTGGGGACCTACAAGGCGATGGCAAAGCTTGCGGTCATGGCCCTCACCAGTGGCGGGAAATAGCAGCCCAGTTTGA
ATCGGAAAGGCAGGAACGGC

Downstream 100 bases:

>100_bases
GAAAAGGCAACAGTCATGAAATGGTCTGACTACACATATACGGTTTCAGCCGATCTCTACCGCTACGGCGGCCGGCGCGA
CAGGGCCGCGTTCCTGAAGA

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKQPKVSVIVTCYNYATYLEGCLASILNQTYQDFELVIINDGSTDNTDEVISRFLDNDKVRYINQKNTGQAIATNNGIAA
AAGELIAFLDADDLWEPTKLEKQVRLFNRDSIGVVYSRIRFMDAEGCTLDMQLEGKYYTPRSGRVTDALLFENFIPYSST
VVRKECFDKFGMFNPEYKNGLDWDLWLRISREYEFDFVDEYLLIYRIGHPGQLTSNVERSVRCADLIFDRFLEENPGIVP
DSVVRKAMAYSYCRRGNQFRKIDRKRSNGFFLNALAKNPAEIGAYVGLVKNFLNM

Sequences:

>Translated_295_residues
MKQPKVSVIVTCYNYATYLEGCLASILNQTYQDFELVIINDGSTDNTDEVISRFLDNDKVRYINQKNTGQAIATNNGIAA
AAGELIAFLDADDLWEPTKLEKQVRLFNRDSIGVVYSRIRFMDAEGCTLDMQLEGKYYTPRSGRVTDALLFENFIPYSST
VVRKECFDKFGMFNPEYKNGLDWDLWLRISREYEFDFVDEYLLIYRIGHPGQLTSNVERSVRCADLIFDRFLEENPGIVP
DSVVRKAMAYSYCRRGNQFRKIDRKRSNGFFLNALAKNPAEIGAYVGLVKNFLNM
>Mature_295_residues
MKQPKVSVIVTCYNYATYLEGCLASILNQTYQDFELVIINDGSTDNTDEVISRFLDNDKVRYINQKNTGQAIATNNGIAA
AAGELIAFLDADDLWEPTKLEKQVRLFNRDSIGVVYSRIRFMDAEGCTLDMQLEGKYYTPRSGRVTDALLFENFIPYSST
VVRKECFDKFGMFNPEYKNGLDWDLWLRISREYEFDFVDEYLLIYRIGHPGQLTSNVERSVRCADLIFDRFLEENPGIVP
DSVVRKAMAYSYCRRGNQFRKIDRKRSNGFFLNALAKNPAEIGAYVGLVKNFLNM

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=111, Percent_Identity=39.6396396396396, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787259, Length=94, Percent_Identity=35.1063829787234, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788372, Length=228, Percent_Identity=25.8771929824561, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 33935; Mature: 33935

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQPKVSVIVTCYNYATYLEGCLASILNQTYQDFELVIINDGSTDNTDEVISRFLDNDKV
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCE
RYINQKNTGQAIATNNGIAAAAGELIAFLDADDLWEPTKLEKQVRLFNRDSIGVVYSRIR
EEECCCCCCCEEEECCCCHHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
FMDAEGCTLDMQLEGKYYTPRSGRVTDALLFENFIPYSSTVVRKECFDKFGMFNPEYKNG
EECCCCCEEEEEECCCEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCC
LDWDLWLRISREYEFDFVDEYLLIYRIGHPGQLTSNVERSVRCADLIFDRFLEENPGIVP
CCEEEEEEEECCCCCHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DSVVRKAMAYSYCRRGNQFRKIDRKRSNGFFLNALAKNPAEIGAYVGLVKNFLNM
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQPKVSVIVTCYNYATYLEGCLASILNQTYQDFELVIINDGSTDNTDEVISRFLDNDKV
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCE
RYINQKNTGQAIATNNGIAAAAGELIAFLDADDLWEPTKLEKQVRLFNRDSIGVVYSRIR
EEECCCCCCCEEEECCCCHHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
FMDAEGCTLDMQLEGKYYTPRSGRVTDALLFENFIPYSSTVVRKECFDKFGMFNPEYKNG
EECCCCCEEEEEECCCEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCC
LDWDLWLRISREYEFDFVDEYLLIYRIGHPGQLTSNVERSVRCADLIFDRFLEENPGIVP
CCEEEEEEEECCCCCHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DSVVRKAMAYSYCRRGNQFRKIDRKRSNGFFLNALAKNPAEIGAYVGLVKNFLNM
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840; 2111805 [H]