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The map label for this gene is cph2 [H]

Identifier: 39996968

GI number: 39996968

Start: 2046614

End: 2047642

Strand: Reverse

Name: cph2 [H]

Synonym: GSU1870

Alternate gene names: 39996968

Gene position: 2047642-2046614 (Counterclockwise)

Preceding gene: 39996972

Following gene: 39996967

Centisome position: 53.69

GC content: 60.25

Gene sequence:

>1029_bases
ATGCTCGAAGCCGAGGTGGTCGCGCTGAAGGACCTGATCGAGGTGGCCGGTGCCGTGGTCTCCACCCTTGACCTCGATAC
GGTGCTCAGGCACATCCTGACGAGCGCCATGCGCTTCGCCGAAACACCGGCCGGCAGCATCGCCCTCTACGACGGGTACC
GCAACGATCTTACCCTCCATGCCCACGAAGGCTTGACCCCGGAGTTCGTCAAAACCGAGCGCTGGAGCGTTCAGCCCGGC
GGACTCACGGAGCAGGTGCTGACCCGTGGCGAGATTCTCTTTGTCAACGACACGGCCGACACGAGCTTCTTCCACAATCC
CACCGCCCTCAACGAGGGGATCCGTTCCCTCATCTGCGTTCCTCTCATGATGCAGAACCGCATTGTCGGCATCCTCTACC
TGGACGATTTCGTCCCCCGGGACTTCGACAAGGAACGGATGAAACTCCTGTCAGTACTCGCATCCTTCGCGGCGATGGCC
ATCGACAACGCCCAGCTCCACGCGCGGACGCGACTGATGGCCATCACCGATTCCCTTACGGGATTGTATAACCATAGATA
TTTCCAGCAGATTTTTAGTCGTGAGCTGAACCGGGCCAAGCGCTATGAAAAGCCTCTTGCTATCATCATGCTCGATGTGG
ACGACTTTAAGAGGTTCAACGACACCTACGGCCATCCCCACGGAGATAAGGTGCTGGCAGCCATGGGCGACTTCCTCGGC
GAGGCCCTGCGGAGCTCGGATTTCGCCTTCCGGTACGGAGGGGAGGAGTTCATTGTCCTGCTGCCCGAAACGGAATTCGA
CAGTGCCCTCCAGGTTGCGGAGCGGCTGCGCGAACTGGTGGAGCGACGAAGCCTCGACGTGCTCAAGGGGCTAGCTCCAC
AGGGCGTTACGGTCAGCGTCGGCGTTGCCTCGTTTCCCCGCGACGGGGAAAGCCGTGGGGATATGCTCAAGCGGGTCGAC
GATCTCCTCTACCGGGCAAAGGAGTTCGGCAAGAACCGCGTGTACAGCAGAAGAGAGGATGAGCCATGA

Upstream 100 bases:

>100_bases
GCGGACTGTCCAATTTACTTTGCCGGCTTGCTGTGCTAATAAAGACTATTTTAGGAGGAAACGGATCATTATGGAACTCA
GCCCCGAGCGCACGCGGGAA

Downstream 100 bases:

>100_bases
CAATGAATCAGGCACGGCGCTTCATCCGGATAATGGCCTGTTGTCTGGCCGTCACGGGCTTCGGGCTCTTGACCGGCTGC
GCCACTTTGACCGAGCTCAT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MLEAEVVALKDLIEVAGAVVSTLDLDTVLRHILTSAMRFAETPAGSIALYDGYRNDLTLHAHEGLTPEFVKTERWSVQPG
GLTEQVLTRGEILFVNDTADTSFFHNPTALNEGIRSLICVPLMMQNRIVGILYLDDFVPRDFDKERMKLLSVLASFAAMA
IDNAQLHARTRLMAITDSLTGLYNHRYFQQIFSRELNRAKRYEKPLAIIMLDVDDFKRFNDTYGHPHGDKVLAAMGDFLG
EALRSSDFAFRYGGEEFIVLLPETEFDSALQVAERLRELVERRSLDVLKGLAPQGVTVSVGVASFPRDGESRGDMLKRVD
DLLYRAKEFGKNRVYSRREDEP

Sequences:

>Translated_342_residues
MLEAEVVALKDLIEVAGAVVSTLDLDTVLRHILTSAMRFAETPAGSIALYDGYRNDLTLHAHEGLTPEFVKTERWSVQPG
GLTEQVLTRGEILFVNDTADTSFFHNPTALNEGIRSLICVPLMMQNRIVGILYLDDFVPRDFDKERMKLLSVLASFAAMA
IDNAQLHARTRLMAITDSLTGLYNHRYFQQIFSRELNRAKRYEKPLAIIMLDVDDFKRFNDTYGHPHGDKVLAAMGDFLG
EALRSSDFAFRYGGEEFIVLLPETEFDSALQVAERLRELVERRSLDVLKGLAPQGVTVSVGVASFPRDGESRGDMLKRVD
DLLYRAKEFGKNRVYSRREDEP
>Mature_342_residues
MLEAEVVALKDLIEVAGAVVSTLDLDTVLRHILTSAMRFAETPAGSIALYDGYRNDLTLHAHEGLTPEFVKTERWSVQPG
GLTEQVLTRGEILFVNDTADTSFFHNPTALNEGIRSLICVPLMMQNRIVGILYLDDFVPRDFDKERMKLLSVLASFAAMA
IDNAQLHARTRLMAITDSLTGLYNHRYFQQIFSRELNRAKRYEKPLAIIMLDVDDFKRFNDTYGHPHGDKVLAAMGDFLG
EALRSSDFAFRYGGEEFIVLLPETEFDSALQVAERLRELVERRSLDVLKGLAPQGVTVSVGVASFPRDGESRGDMLKRVD
DLLYRAKEFGKNRVYSRREDEP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=40.8805031446541, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081881, Length=158, Percent_Identity=42.4050632911392, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787262, Length=193, Percent_Identity=33.160621761658, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=34.1317365269461, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=34.4827586206897, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=33.9622641509434, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI87081974, Length=160, Percent_Identity=31.25, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787541, Length=165, Percent_Identity=32.1212121212121, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787802, Length=230, Percent_Identity=28.695652173913, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=32.3353293413174, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=158, Percent_Identity=29.746835443038, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081977, Length=198, Percent_Identity=26.2626262626263, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=32.7380952380952, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 38611; Mature: 38611

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEAEVVALKDLIEVAGAVVSTLDLDTVLRHILTSAMRFAETPAGSIALYDGYRNDLTLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEE
AHEGLTPEFVKTERWSVQPGGLTEQVLTRGEILFVNDTADTSFFHNPTALNEGIRSLICV
ECCCCCHHHHCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
PLMMQNRIVGILYLDDFVPRDFDKERMKLLSVLASFAAMAIDNAQLHARTRLMAITDSLT
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GLYNHRYFQQIFSRELNRAKRYEKPLAIIMLDVDDFKRFNDTYGHPHGDKVLAAMGDFLG
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
EALRSSDFAFRYGGEEFIVLLPETEFDSALQVAERLRELVERRSLDVLKGLAPQGVTVSV
HHHHCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
GVASFPRDGESRGDMLKRVDDLLYRAKEFGKNRVYSRREDEP
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLEAEVVALKDLIEVAGAVVSTLDLDTVLRHILTSAMRFAETPAGSIALYDGYRNDLTLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEE
AHEGLTPEFVKTERWSVQPGGLTEQVLTRGEILFVNDTADTSFFHNPTALNEGIRSLICV
ECCCCCHHHHCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
PLMMQNRIVGILYLDDFVPRDFDKERMKLLSVLASFAAMAIDNAQLHARTRLMAITDSLT
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GLYNHRYFQQIFSRELNRAKRYEKPLAIIMLDVDDFKRFNDTYGHPHGDKVLAAMGDFLG
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
EALRSSDFAFRYGGEEFIVLLPETEFDSALQVAERLRELVERRSLDVLKGLAPQGVTVSV
HHHHCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
GVASFPRDGESRGDMLKRVDDLLYRAKEFGKNRVYSRREDEP
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]