| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is scpB [H]
Identifier: 39996930
GI number: 39996930
Start: 1997567
End: 1998154
Strand: Reverse
Name: scpB [H]
Synonym: GSU1831
Alternate gene names: 39996930
Gene position: 1998154-1997567 (Counterclockwise)
Preceding gene: 304569790
Following gene: 39996929
Centisome position: 52.39
GC content: 60.71
Gene sequence:
>588_bases ATGCACCGGCTTGAGTCCCTTGTGGAAAGCCTGCTTTTCGTTTCAGAGACACCGTTGTCTCTGGATCGTCTCTGCTCATT GCTGGAGGAGTTCGACCGGGCCGCTATTCGCGAGGCTCTTGATCGCCTGCTGGAACGCTATGGCGGAGAGGGCCGGGGTA TTATCCTGGCTGAGGTGGGGGGCGGATTCCAGTTCCGGACTCCCGCCGGCAACGGAGATGTGATCCGGCGGCTCACCAAG GCCCGGCCGGCCCGGTTCAGCCAGTCTGCTCTGGAGACACTGGCCATCATCGCCTACCGTCAGCCGGTCACCCGAGCCGA AATCGAGTACCTGCGCGGGGTTGATTCGGGCGGGGTGCTGAAGACCCTTCTGGAGAAGAAGCTCATCAAGATTCTCGGCA AGCGCGATATTCCAGGGAAACCTCTCATCTACGGCACCACCCGCGAATTTCTCGAACTGTTTGCCCTGAAGGACCTGAAG AGTCTGCCGTCACTCAGGGAGATCCGCGAGCTTTCCGAAACCGCGGTATTCGAGCAGCAGGAGGAACTGCCGCTGGCTGC TCCTCCGGAAGAGGGCAGAGAGCCGTAA
Upstream 100 bases:
>100_bases AAGTTGAAGATGGTGCGGGTCGTTCAGGCGAGCCGCTACGGCTCCATCTGGATCGCGCCGGCAGTGTCGGATTCGGCGGA TGCCGCCGGGGAGTTGACTG
Downstream 100 bases:
>100_bases ATGTGGTATACGTTATACGTCGACACGTTGCCACAGGGGGGCGGCACGAGGTTACGGGTGTCAAGGAGGATGCCATGGTA CGTCAACCAGCAGTGGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 195; Mature: 195
Protein sequence:
>195_residues MHRLESLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQFRTPAGNGDVIRRLTK ARPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLLEKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLK SLPSLREIRELSETAVFEQQEELPLAAPPEEGREP
Sequences:
>Translated_195_residues MHRLESLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQFRTPAGNGDVIRRLTK ARPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLLEKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLK SLPSLREIRELSETAVFEQQEELPLAAPPEEGREP >Mature_195_residues MHRLESLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQFRTPAGNGDVIRRLTK ARPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLLEKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLK SLPSLREIRELSETAVFEQQEELPLAAPPEEGREP
Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]
COG id: COG1386
COG function: function code K; Predicted transcriptional regulator containing the HTH domain
Gene ontology:
Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the scpB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005234 - InterPro: IPR011991 [H]
Pfam domain/function: PF04079 DUF387 [H]
EC number: NA
Molecular weight: Translated: 21844; Mature: 21844
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHRLESLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVG CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC GGFQFRTPAGNGDVIRRLTKARPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVL CCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHH KTLLEKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSLREIRELSETAVFEQQ HHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EELPLAAPPEEGREP HCCCCCCCCCCCCCC >Mature Secondary Structure MHRLESLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVG CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC GGFQFRTPAGNGDVIRRLTKARPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVL CCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHH KTLLEKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSLREIRELSETAVFEQQ HHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EELPLAAPPEEGREP HCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA