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The map label for this gene is 39996887

Identifier: 39996887

GI number: 39996887

Start: 1951381

End: 1952445

Strand: Reverse

Name: 39996887

Synonym: GSU1788

Alternate gene names: NA

Gene position: 1952445-1951381 (Counterclockwise)

Preceding gene: 39996888

Following gene: 39996886

Centisome position: 51.19

GC content: 50.99

Gene sequence:

>1065_bases
ATGAGACTAAGCCGTGGCGTATTCCTTCTTCTATTGTTGCTCGCGCTAGCATCACCATTGATGATCGTTGGGTGCGGCGG
TCCGTCGTTCTTGCCCGCCGCCTCATTGCGAGACCCATCGGTGGATATGGCTTGGCCTCCTGCTCCTAATCCGGCCCGGA
TACGATTTCTTCGTGAAATTTCCGGGCCGGAGCAGGTTAAGGCTGAACCAGGAGCAATAGCCCGTTTTCTTGAGTTTGTT
ACCGGCGAGCAGTTCAAGCATGTTCCCTTTGTAACTCCCTACGGGGTTGTCTCGGATGGCGGAACGCTTTTGTTTGTTTC
CGATTCCTCGTCTGGTGTCGTTCATCGCATCGATCTGGCGCGGCAAAAGGTTTCCTATATTGTTCGGGCTGGCGATGAGT
TCCTCTCAAGCCCGGTCGGACTCGCCCTCTCCCCTTCAGGTGATCTGTACGTCAGCGATTCGGTCAATGCCAAAGTGTAC
GTTTTTTCCCGTGACGGAGAGTTTTTGCGTGTCCTGGCTGATGGCCAGGTCGACTTCAAGAGACCGGCCGGTTTGGCCGT
GAACAGTAAAGGCGTTCTTTTTGTTGTTGATGTGTTGGCACATAAATTGAAAGTTTTTAACGTGAGTGGGCGTTTCTTGG
GAGATTTCCCCCCTGATGATATTGGGGGTAAATTAAACCTTCCCTCCCATGTGGCCGTTGATAAGGACGATAAAGTCTAT
GTTACCGATGCCTTGAATTTTACGGTCAAGGTGTATGATTCAGCCCGTCGCTATCTCCGAAGTATCGGTGAAATAGGAGA
TGCTCCCGGTTCTTTCGCGAGGCCCCGTGGCGTTGCAGTCGACAGTGACCTCAATGTGTACGTGATCGATGCCGCGTTTG
ACAATTTTCAGATTTTTAATCAGGAGGGGCAATTGCTCCTTTTCGTTGGAAAACCCGGCAAGAAAAGCGGTGAGTTTTAC
ATGCCGAGCGGCATTCATATCGATCGCAACGATCGAATCTTCATCTCTGATTCGTACAACCGGCGGGTCCAGGTATTCGA
ATACCTGAAAGAGGAAAATCGATGA

Upstream 100 bases:

>100_bases
CCTTTCCCGCGGAAGGCGTTTTTGATCGCAGGGCTGCGAGTATCTGGGGGGGGAGCGTAGTGCTCCTCTTTGCGTTATGG
GTAGCAGGGATGATAATGGC

Downstream 100 bases:

>100_bases
TGACGAGGATCTTTTGGGTCATGTTCGTGACAGCGCTCGTCATGGGCAGTGCCCGCCTGAATTACGGGGCACCCGGGCCC
AAATTTACCGATTCAGGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NHL Repeat-Containing Protein; Peptidylamidoglycolate Lyase; PA14 Domain-Containing Protein; Ring Finger; Fibronectin Type III Domain-Containing Protein; Tetratricopeptide Repeat-Containing Protein; SMP-30/Gluconolaconase/LRE Domain Protein; NHL Repeat Domain-Containing Protein; NHL Repeat Protein; PKD Domain Containing Protein; Cell Surface Protein; NHL Repeat Domain Protein; Surface Layer Protein

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MRLSRGVFLLLLLLALASPLMIVGCGGPSFLPAASLRDPSVDMAWPPAPNPARIRFLREISGPEQVKAEPGAIARFLEFV
TGEQFKHVPFVTPYGVVSDGGTLLFVSDSSSGVVHRIDLARQKVSYIVRAGDEFLSSPVGLALSPSGDLYVSDSVNAKVY
VFSRDGEFLRVLADGQVDFKRPAGLAVNSKGVLFVVDVLAHKLKVFNVSGRFLGDFPPDDIGGKLNLPSHVAVDKDDKVY
VTDALNFTVKVYDSARRYLRSIGEIGDAPGSFARPRGVAVDSDLNVYVIDAAFDNFQIFNQEGQLLLFVGKPGKKSGEFY
MPSGIHIDRNDRIFISDSYNRRVQVFEYLKEENR

Sequences:

>Translated_354_residues
MRLSRGVFLLLLLLALASPLMIVGCGGPSFLPAASLRDPSVDMAWPPAPNPARIRFLREISGPEQVKAEPGAIARFLEFV
TGEQFKHVPFVTPYGVVSDGGTLLFVSDSSSGVVHRIDLARQKVSYIVRAGDEFLSSPVGLALSPSGDLYVSDSVNAKVY
VFSRDGEFLRVLADGQVDFKRPAGLAVNSKGVLFVVDVLAHKLKVFNVSGRFLGDFPPDDIGGKLNLPSHVAVDKDDKVY
VTDALNFTVKVYDSARRYLRSIGEIGDAPGSFARPRGVAVDSDLNVYVIDAAFDNFQIFNQEGQLLLFVGKPGKKSGEFY
MPSGIHIDRNDRIFISDSYNRRVQVFEYLKEENR
>Mature_354_residues
MRLSRGVFLLLLLLALASPLMIVGCGGPSFLPAASLRDPSVDMAWPPAPNPARIRFLREISGPEQVKAEPGAIARFLEFV
TGEQFKHVPFVTPYGVVSDGGTLLFVSDSSSGVVHRIDLARQKVSYIVRAGDEFLSSPVGLALSPSGDLYVSDSVNAKVY
VFSRDGEFLRVLADGQVDFKRPAGLAVNSKGVLFVVDVLAHKLKVFNVSGRFLGDFPPDDIGGKLNLPSHVAVDKDDKVY
VTDALNFTVKVYDSARRYLRSIGEIGDAPGSFARPRGVAVDSDLNVYVIDAAFDNFQIFNQEGQLLLFVGKPGKKSGEFY
MPSGIHIDRNDRIFISDSYNRRVQVFEYLKEENR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI194248079, Length=214, Percent_Identity=31.7757009345794, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI194248081, Length=214, Percent_Identity=31.7757009345794, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI84993742, Length=220, Percent_Identity=30.4545454545455, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI32454739, Length=269, Percent_Identity=28.6245353159851, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI32454737, Length=269, Percent_Identity=28.6245353159851, Blast_Score=105, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17553622, Length=263, Percent_Identity=31.9391634980989, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI71980716, Length=229, Percent_Identity=30.5676855895196, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71980713, Length=229, Percent_Identity=30.5676855895196, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17554338, Length=198, Percent_Identity=30.3030303030303, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24655386, Length=269, Percent_Identity=30.8550185873606, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI22024206, Length=269, Percent_Identity=30.8550185873606, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI221330419, Length=269, Percent_Identity=30.8550185873606, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI221330033, Length=225, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI221330031, Length=225, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24586266, Length=225, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24586264, Length=225, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI22026822, Length=225, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI45552407, Length=225, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI19549884, Length=225, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI17136846, Length=225, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38794; Mature: 38794

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51125 NHL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSRGVFLLLLLLALASPLMIVGCGGPSFLPAASLRDPSVDMAWPPAPNPARIRFLREI
CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHHC
SGPEQVKAEPGAIARFLEFVTGEQFKHVPFVTPYGVVSDGGTLLFVSDSSSGVVHRIDLA
CCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCEEEEHHHH
RQKVSYIVRAGDEFLSSPVGLALSPSGDLYVSDSVNAKVYVFSRDGEFLRVLADGQVDFK
HHHHHHHHHCCHHHHCCCCCEEECCCCCEEEECCCCEEEEEEECCCCEEEEEECCCEEEC
RPAGLAVNSKGVLFVVDVLAHKLKVFNVSGRFLGDFPPDDIGGKLNLPSHVAVDKDDKVY
CCCCEEECCCCCEEEEEHHHCEEEEEEECCCEECCCCCCCCCCEECCCCEEEECCCCCEE
VTDALNFTVKVYDSARRYLRSIGEIGDAPGSFARPRGVAVDSDLNVYVIDAAFDNFQIFN
EEEECEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEECCCEEEEC
QEGQLLLFVGKPGKKSGEFYMPSGIHIDRNDRIFISDSYNRRVQVFEYLKEENR
CCCCEEEEEECCCCCCCCEECCCCEEECCCCEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRLSRGVFLLLLLLALASPLMIVGCGGPSFLPAASLRDPSVDMAWPPAPNPARIRFLREI
CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHHC
SGPEQVKAEPGAIARFLEFVTGEQFKHVPFVTPYGVVSDGGTLLFVSDSSSGVVHRIDLA
CCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCEEEEHHHH
RQKVSYIVRAGDEFLSSPVGLALSPSGDLYVSDSVNAKVYVFSRDGEFLRVLADGQVDFK
HHHHHHHHHCCHHHHCCCCCEEECCCCCEEEECCCCEEEEEEECCCCEEEEEECCCEEEC
RPAGLAVNSKGVLFVVDVLAHKLKVFNVSGRFLGDFPPDDIGGKLNLPSHVAVDKDDKVY
CCCCEEECCCCCEEEEEHHHCEEEEEEECCCEECCCCCCCCCCEECCCCEEEECCCCCEE
VTDALNFTVKVYDSARRYLRSIGEIGDAPGSFARPRGVAVDSDLNVYVIDAAFDNFQIFN
EEEECEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEECCCEEEEC
QEGQLLLFVGKPGKKSGEFYMPSGIHIDRNDRIFISDSYNRRVQVFEYLKEENR
CCCCEEEEEECCCCCCCCEECCCCEEECCCCEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA