| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is cca [H]
Identifier: 39996681
GI number: 39996681
Start: 1732220
End: 1734862
Strand: Direct
Name: cca [H]
Synonym: GSU1581
Alternate gene names: 39996681
Gene position: 1732220-1734862 (Clockwise)
Preceding gene: 39996680
Following gene: 39996685
Centisome position: 45.42
GC content: 60.84
Gene sequence:
>2643_bases ATGGATGTTATTACCACCCACGTGAACGCCGATTTCGATTGTCTCGGCGCCATGGTCGCGGCCAGTAAACTCTACCCCGA CGCCCTTATGGTCTTCTCCGGTTCCCAGGAAAAGAGCATGAGGGATCTCTTCCTCAAGACAACCGGCTACGCACTCCCCT TTACCCGGCTCAGGGATGTGGATTTTTCCGATATTACGCGACTGGTTCTCGTAGATTGCCAGCATACCTCGCGTATCGGC CGCTTTGCGGAGGTTGCACGTCGACCCGGCGTCGAGGTCCATATCTACGACCACCATCCCGGCTCCAGCGGCGACATCAG GCCGAGCGGCGGAGAGATCCGCGATTGCGGCTCGTCCACGACTATTCTGACCCGAAAGCTCATGGAGCAGGGCATCGAGG TGACCGCTGTCGAGGCTACCCTCATGATGCTGGGCATCTATGAAGACACGGGCAACTTGACCTTTCCTTCCACCACCCCC GAAGACTATGCCGCAGCATCCTGGCTCCTGGAGCGGGGAGCCAACCTGAATATCGTGTCGGATTTCGTCTCTCAGGAGCT GACTGCCGAGCAGGTTGCGCTTCTGAACGATCTGCTGAAGTCCCTGCGCAGTACGCCGGTGAACGGGGTCGACATCGCCG TTGCCCATGCCACTCTCGACCACTATGTGGGCGACATTGCGGTTCTTGCCCACATGATGCGCGACATGCAGAACCTGGAC GCGATCTTTCTCGTGGTTGGAATGGGGGAGAGGGTCTACCTGGTGGCGCGCAGCCGCATTGCCGAAGTCGATGCCGGCGC TGTCATGCGCGTCTTCGGCGGGGGAGGGCATGCCACTGCTGCGGCTGCCACGGTAAGGGACCAGACCGTAATCCAGGTTT TGGGTCGTCTCAACAGACTTCTGCCCGAGCTGGTAAACCCTGTCAGGACAGCCGCTGACCTCATGTCATCGCCGGTGATT ACCCTGCCCCTTGCCACGACCATCACCGAGGCGCGGGAGATACTCACCCGTTACAATGTGAATGCCATGCCGGTCATGGA CGGGGAACGGATGGCGGGGATCATCTCACGCCGGATCGTGGAAAAGGCGCTCTATCACGGTCTCGGCAACCTGCCCGTGG ACGAATACATGCACACGGAGTTTCTGCGGGCCGCTCCCGACACCCCGATCAACGCTATCCAGGACTATATCGTCGGCCAG CATCGGCGGCTGGTACCGGTATTCAGCGGTGAACGGCTCGTGGGGGTCATAACGCGGACTGATCTCCTGCGGTATATGTA CACCGGCACGCAGCGCAACGCCGAACCGGTCTATGACCTGGGAAGCGAGAACCTGCCGGTGCGGCGGCGCGAGGTGGTCC ATCTCATGAACAGGCACCTGCCGCGCCCGACGGTCGCCATGCTGCGCGACCTTGGCAAGGTGGGGGATGAACTGGAGCTG CCCGTGTACGCAGTCGGTGGTTTTGTGCGGGATCTGCTTCTGGGGGCAGAGAACGACGACATCGACGTGTCGGTGGAAGG CGATGGCATCCTGTTCGCCGAGACCGTTGCGAATCGCGTGGGATGCCGGGTGAAAAGTCACGCCAAATTCGGCACCGCGG TTATTGTCTTTCCTGACGGACTCAAGGTGGACGTCGCGAGCACACGGCTCGAATACTACGAAACGCCGGGCGCCCTGCCC ACGGTGGAGCGTTCGTCGCTCAAGATGGACCTGTACCGGCGTGACTTCACCATCAACACCCTGGCGGTGAAGCTCAACGC GGAAGGGTTCGGTACCCTGATCGACTACTTCGGCGCCTATCGCGACCTGCAGGAAAAGACCATCCGGGTGCTCCACAACC TGTCCTTTGTCGAGGACCCGACCAGGGTGTTCCGGGCTATCCGCTTCGAGCAGCGTCTCGGATTCCCGATCTCGCGACAC ACGGAAAATCTCATCAAGAACGCGGTGAAAATGGGATTTTTGGACAAGCTGGGGGGGCGGAGGCTGCTGAACGAACTGGT GCTGATCCTTCGGGAGCGGGAGCCGGTCAAGGCCATCCTCCGGATGTCTGGGCTGGGGCTTCTCCGGTTCATTCACCCGG ACCTGGTCCTGGCGCCCAACACCCTGCAGGTGCTGGACGAGGTCAAGAAGGTGATCACCTGGTTCGATCTCCTCTACCTG GGCGAGAAGGTCGAGACGTGGGTGGTGTACTTCCTGGCGCTCACCTCGAGTCTGCCGGACGAGGGGTTCTGGGGAACCTG CACGCGGCTTTCCGTATCTGAGCACTACCGGGAAAAACTCATCGATATGAGAGTTCACGGCGAGCAGGTCCTGGAGGTCA TGACCCGCAAGGCGGCCCGTCGGGAGGATGTGCGCCGCAGCGATATCTACTTCTGGCTCAGGGGGCTCTCTCCCGAAGTG CTGCTCTACATCATGGCGAAAACCCGGAGTGATGAGGTGAGACGTTACGTTTCCCTGTACGTGACCCAGTTGCGGGGCAT CGTTACCCATATTACCGGCGATGACCTCAAGACCTTGGGAATCCCTTCAGGGCCGCGATACCGGGAGATCCTCGACCGGG TCCTTACCGCCCGCCTCAACGGCGAAGCGGCAACCCGCGACGACGAGATGCGCATTGCCGTGCGTCTGGCGGATTCGGCC TGA
Upstream 100 bases:
>100_bases GGTCTACCAGCCTGCTCCGCTGCGTCCCATGGTTGCTACGCGTTAGCCCGAGCAGCATTCAGTCCTTTACTTTTACCGAG GCTGCGGCACACTCTTTCCC
Downstream 100 bases:
>100_bases CAATCGCCGGAGCCCAGCGCAGGCGCAGTGTGTGGTTCACCCTCCGGTGACCGTGTGGATTGACTTTTCCAAGCCGTCAA CGAGGAAGTCGATTTCCTCG
Product: polyA polymerase
Products: NA
Alternate protein names: CCA-adding enzyme; tRNA CCA-pyrophosphorylase; tRNA adenylyl-/cytidylyl-transferase; tRNA nucleotidyltransferase; tRNA-NT; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase [H]
Number of amino acids: Translated: 880; Mature: 880
Protein sequence:
>880_residues MDVITTHVNADFDCLGAMVAASKLYPDALMVFSGSQEKSMRDLFLKTTGYALPFTRLRDVDFSDITRLVLVDCQHTSRIG RFAEVARRPGVEVHIYDHHPGSSGDIRPSGGEIRDCGSSTTILTRKLMEQGIEVTAVEATLMMLGIYEDTGNLTFPSTTP EDYAAASWLLERGANLNIVSDFVSQELTAEQVALLNDLLKSLRSTPVNGVDIAVAHATLDHYVGDIAVLAHMMRDMQNLD AIFLVVGMGERVYLVARSRIAEVDAGAVMRVFGGGGHATAAAATVRDQTVIQVLGRLNRLLPELVNPVRTAADLMSSPVI TLPLATTITEAREILTRYNVNAMPVMDGERMAGIISRRIVEKALYHGLGNLPVDEYMHTEFLRAAPDTPINAIQDYIVGQ HRRLVPVFSGERLVGVITRTDLLRYMYTGTQRNAEPVYDLGSENLPVRRREVVHLMNRHLPRPTVAMLRDLGKVGDELEL PVYAVGGFVRDLLLGAENDDIDVSVEGDGILFAETVANRVGCRVKSHAKFGTAVIVFPDGLKVDVASTRLEYYETPGALP TVERSSLKMDLYRRDFTINTLAVKLNAEGFGTLIDYFGAYRDLQEKTIRVLHNLSFVEDPTRVFRAIRFEQRLGFPISRH TENLIKNAVKMGFLDKLGGRRLLNELVLILREREPVKAILRMSGLGLLRFIHPDLVLAPNTLQVLDEVKKVITWFDLLYL GEKVETWVVYFLALTSSLPDEGFWGTCTRLSVSEHYREKLIDMRVHGEQVLEVMTRKAARREDVRRSDIYFWLRGLSPEV LLYIMAKTRSDEVRRYVSLYVTQLRGIVTHITGDDLKTLGIPSGPRYREILDRVLTARLNGEAATRDDEMRIAVRLADSA
Sequences:
>Translated_880_residues MDVITTHVNADFDCLGAMVAASKLYPDALMVFSGSQEKSMRDLFLKTTGYALPFTRLRDVDFSDITRLVLVDCQHTSRIG RFAEVARRPGVEVHIYDHHPGSSGDIRPSGGEIRDCGSSTTILTRKLMEQGIEVTAVEATLMMLGIYEDTGNLTFPSTTP EDYAAASWLLERGANLNIVSDFVSQELTAEQVALLNDLLKSLRSTPVNGVDIAVAHATLDHYVGDIAVLAHMMRDMQNLD AIFLVVGMGERVYLVARSRIAEVDAGAVMRVFGGGGHATAAAATVRDQTVIQVLGRLNRLLPELVNPVRTAADLMSSPVI TLPLATTITEAREILTRYNVNAMPVMDGERMAGIISRRIVEKALYHGLGNLPVDEYMHTEFLRAAPDTPINAIQDYIVGQ HRRLVPVFSGERLVGVITRTDLLRYMYTGTQRNAEPVYDLGSENLPVRRREVVHLMNRHLPRPTVAMLRDLGKVGDELEL PVYAVGGFVRDLLLGAENDDIDVSVEGDGILFAETVANRVGCRVKSHAKFGTAVIVFPDGLKVDVASTRLEYYETPGALP TVERSSLKMDLYRRDFTINTLAVKLNAEGFGTLIDYFGAYRDLQEKTIRVLHNLSFVEDPTRVFRAIRFEQRLGFPISRH TENLIKNAVKMGFLDKLGGRRLLNELVLILREREPVKAILRMSGLGLLRFIHPDLVLAPNTLQVLDEVKKVITWFDLLYL GEKVETWVVYFLALTSSLPDEGFWGTCTRLSVSEHYREKLIDMRVHGEQVLEVMTRKAARREDVRRSDIYFWLRGLSPEV LLYIMAKTRSDEVRRYVSLYVTQLRGIVTHITGDDLKTLGIPSGPRYREILDRVLTARLNGEAATRDDEMRIAVRLADSA >Mature_880_residues MDVITTHVNADFDCLGAMVAASKLYPDALMVFSGSQEKSMRDLFLKTTGYALPFTRLRDVDFSDITRLVLVDCQHTSRIG RFAEVARRPGVEVHIYDHHPGSSGDIRPSGGEIRDCGSSTTILTRKLMEQGIEVTAVEATLMMLGIYEDTGNLTFPSTTP EDYAAASWLLERGANLNIVSDFVSQELTAEQVALLNDLLKSLRSTPVNGVDIAVAHATLDHYVGDIAVLAHMMRDMQNLD AIFLVVGMGERVYLVARSRIAEVDAGAVMRVFGGGGHATAAAATVRDQTVIQVLGRLNRLLPELVNPVRTAADLMSSPVI TLPLATTITEAREILTRYNVNAMPVMDGERMAGIISRRIVEKALYHGLGNLPVDEYMHTEFLRAAPDTPINAIQDYIVGQ HRRLVPVFSGERLVGVITRTDLLRYMYTGTQRNAEPVYDLGSENLPVRRREVVHLMNRHLPRPTVAMLRDLGKVGDELEL PVYAVGGFVRDLLLGAENDDIDVSVEGDGILFAETVANRVGCRVKSHAKFGTAVIVFPDGLKVDVASTRLEYYETPGALP TVERSSLKMDLYRRDFTINTLAVKLNAEGFGTLIDYFGAYRDLQEKTIRVLHNLSFVEDPTRVFRAIRFEQRLGFPISRH TENLIKNAVKMGFLDKLGGRRLLNELVLILREREPVKAILRMSGLGLLRFIHPDLVLAPNTLQVLDEVKKVITWFDLLYL GEKVETWVVYFLALTSSLPDEGFWGTCTRLSVSEHYREKLIDMRVHGEQVLEVMTRKAARREDVRRSDIYFWLRGLSPEV LLYIMAKTRSDEVRRYVSLYVTQLRGIVTHITGDDLKTLGIPSGPRYREILDRVLTARLNGEAATRDDEMRIAVRLADSA
Specific function: Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing
COG id: COG0617
COG function: function code J; tRNA nucleotidyltransferase/poly(A) polymerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI87081691, Length=239, Percent_Identity=29.2887029288703, Blast_Score=70, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012006 - InterPro: IPR003607 - InterPro: IPR002646 [H]
Pfam domain/function: PF01743 PolyA_pol [H]
EC number: =2.7.7.21; =2.7.7.25 [H]
Molecular weight: Translated: 98396; Mature: 98396
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVITTHVNADFDCLGAMVAASKLYPDALMVFSGSQEKSMRDLFLKTTGYALPFTRLRDV CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCCC DFSDITRLVLVDCQHTSRIGRFAEVARRPGVEVHIYDHHPGSSGDIRPSGGEIRDCGSST CHHHHHHHHEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH TILTRKLMEQGIEVTAVEATLMMLGIYEDTGNLTFPSTTPEDYAAASWLLERGANLNIVS HHHHHHHHHCCCCEEEHHHEEEEEEEEECCCCEECCCCCCHHHHHHHHHHHCCCCCCHHH DFVSQELTAEQVALLNDLLKSLRSTPVNGVDIAVAHATLDHYVGDIAVLAHMMRDMQNLD HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC AIFLVVGMGERVYLVARSRIAEVDAGAVMRVFGGGGHATAAAATVRDQTVIQVLGRLNRL EEEEEEECCCEEEEEEHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH LPELVNPVRTAADLMSSPVITLPLATTITEAREILTRYNVNAMPVMDGERMAGIISRRIV HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHH EKALYHGLGNLPVDEYMHTEFLRAAPDTPINAIQDYIVGQHRRLVPVFSGERLVGVITRT HHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEEEHHHH DLLRYMYTGTQRNAEPVYDLGSENLPVRRREVVHLMNRHLPRPTVAMLRDLGKVGDELEL HHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC PVYAVGGFVRDLLLGAENDDIDVSVEGDGILFAETVANRVGCRVKSHAKFGTAVIVFPDG CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHHCCCEECCCCCCEEEEEECCC LKVDVASTRLEYYETPGALPTVERSSLKMDLYRRDFTINTLAVKLNAEGFGTLIDYFGAY CEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHHH RDLQEKTIRVLHNLSFVEDPTRVFRAIRFEQRLGFPISRHTENLIKNAVKMGFLDKLGGR HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHH RLLNELVLILREREPVKAILRMSGLGLLRFIHPDLVLAPNTLQVLDEVKKVITWFDLLYL HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHH GEKVETWVVYFLALTSSLPDEGFWGTCTRLSVSEHYREKLIDMRVHGEQVLEVMTRKAAR CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH REDVRRSDIYFWLRGLSPEVLLYIMAKTRSDEVRRYVSLYVTQLRGIVTHITGDDLKTLG HHHHHHHHHHHHEECCCHHHEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC IPSGPRYREILDRVLTARLNGEAATRDDEMRIAVRLADSA CCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCC >Mature Secondary Structure MDVITTHVNADFDCLGAMVAASKLYPDALMVFSGSQEKSMRDLFLKTTGYALPFTRLRDV CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCCC DFSDITRLVLVDCQHTSRIGRFAEVARRPGVEVHIYDHHPGSSGDIRPSGGEIRDCGSST CHHHHHHHHEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH TILTRKLMEQGIEVTAVEATLMMLGIYEDTGNLTFPSTTPEDYAAASWLLERGANLNIVS HHHHHHHHHCCCCEEEHHHEEEEEEEEECCCCEECCCCCCHHHHHHHHHHHCCCCCCHHH DFVSQELTAEQVALLNDLLKSLRSTPVNGVDIAVAHATLDHYVGDIAVLAHMMRDMQNLD HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC AIFLVVGMGERVYLVARSRIAEVDAGAVMRVFGGGGHATAAAATVRDQTVIQVLGRLNRL EEEEEEECCCEEEEEEHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH LPELVNPVRTAADLMSSPVITLPLATTITEAREILTRYNVNAMPVMDGERMAGIISRRIV HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHH EKALYHGLGNLPVDEYMHTEFLRAAPDTPINAIQDYIVGQHRRLVPVFSGERLVGVITRT HHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEEEHHHH DLLRYMYTGTQRNAEPVYDLGSENLPVRRREVVHLMNRHLPRPTVAMLRDLGKVGDELEL HHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC PVYAVGGFVRDLLLGAENDDIDVSVEGDGILFAETVANRVGCRVKSHAKFGTAVIVFPDG CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHHCCCEECCCCCCEEEEEECCC LKVDVASTRLEYYETPGALPTVERSSLKMDLYRRDFTINTLAVKLNAEGFGTLIDYFGAY CEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHHH RDLQEKTIRVLHNLSFVEDPTRVFRAIRFEQRLGFPISRHTENLIKNAVKMGFLDKLGGR HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHH RLLNELVLILREREPVKAILRMSGLGLLRFIHPDLVLAPNTLQVLDEVKKVITWFDLLYL HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHH GEKVETWVVYFLALTSSLPDEGFWGTCTRLSVSEHYREKLIDMRVHGEQVLEVMTRKAAR CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH REDVRRSDIYFWLRGLSPEVLLYIMAKTRSDEVRRYVSLYVTQLRGIVTHITGDDLKTLG HHHHHHHHHHHHEECCCHHHEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC IPSGPRYREILDRVLTARLNGEAATRDDEMRIAVRLADSA CCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA