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The map label for this gene is recD [H]

Identifier: 39996635

GI number: 39996635

Start: 1687048

End: 1688835

Strand: Direct

Name: recD [H]

Synonym: GSU1535

Alternate gene names: 39996635

Gene position: 1687048-1688835 (Clockwise)

Preceding gene: 39996634

Following gene: 39996638

Centisome position: 44.23

GC content: 69.74

Gene sequence:

>1788_bases
GTGAGTGCCGACGACCTGCAATTCCGCGACATCGACGCCTGTTTTGCCGACTTCCTCTGCCGCCTGGCCGGGGGCCGGAA
CGACGATCTCCATCGGGCCGCCATGCACGCCAGCGCCGCCGTAGGGGCCGGCCACGTCTGCCTGCACCTGGACGAGGCCT
TTGGCAGCAATGGAGCGGCCCTGGCCGTCACCCTCAGGGCCCTGCCGGTGGTGGGCCCGCCCGGTGGCCGCACCCCCCTG
ATCCTTGACGAAAAGAACCGCCTCTACCTTTATCGATACTGGAACTATGAATATCTAGTTGCTGAATTCATAAAGCAAAA
ATCCGCAGAGCTCCGTCCCGTTTCCCTGCCGCTCCTGCGGGCGGGTATTGACCGGATCTTCGGGCCGAAGGGGGACGATG
CCGTGGACTGGCAGCGGGTGGCTGCCGCGGCCGCGGTGCGGAGCGGCTTTTGCGTCATCTCCGGGGGGCCGGGTACCGGC
AAGACCTCCACCGTGGTTTCGATCCTGGCCCTGCTCCTGGAGCAGGCCGGCGAGGAGGGGGCGGGCATTGCCCTGGCAGC
GCCCACGGGAAAGGCCGCGGCGCGGCTCGGCGACTCCATCCGCGACGCCCGTCAGCGCCTGGCAGCGGTGACCCCCGTGG
CGGAACGGATTCCCGGCCAGGTCTCCACCATCCACCGGCTGCTGGGGGTGATTCCCGGCTCGGTCCGTTTCCGTCATGAC
CGGCACAATCCGCTGCCCCACCGGGTAGTGGTGGTGGACGAGGCCTCCATGGTGCCGCTGCCTCTCATGGCCCGGCTGGT
GGAGGCCCTGGCGCCGTCGGCTCGGCTCATCCTCCTGGGGGACCGGGACCAGCTCGCCTCGGTGGAGGCCGGGGCCGTGC
TGGGCGACATCTGCGACACCGGGCGGGCGCACCGGTTCTCGGCCCCGTTCCGGGAGTTCATCCGTGATGCCGCGAGTGAG
GAGATCGAGGGAGAAGCCGGGGACGACGGGAACGACCAGCCGGGTACGCCGGCCGACTCCCTGGTGATCCTGCGCAGGAA
CTACCGCTTCGGTGCGGCCAGCGCCATTGGCGCGGCCAGTGCGGCCGTGAACGAGGGCGACGGGGACCGGCTCATGGCGC
TTGTGTCAGGAGAAGGGATGGACGGAGGCGTGGCGCTCCGGCCCGTGCCGCCGGCGGAGCGGCTTGCCGGGGCCCTGGCT
GAGAGCGTTGTTGCGGGGTACGGCGAGTATCTGGGGCAGGCGGACCCGGAACAGGCCCTGGCCTGCTTCGACCGCTTCCG
GGTCCTTTGTGCCGTTCGGCAGGGGGAGTACGGGGTGCAGGGGCTCAACCGGGCCATCGAGCGGGTCCTGGCACGGCAGG
GGCTCATCGATGCCGACCGCGTCTGGTATCCGGGGCGGCCGGTCATGGTGACGGTGAACGACTACGGGCTGGGGCTTTTC
AACGGCGACATCGGCCTGGCGGTTGCCGATCCCGCCTTCAGCGGCGGCCTGGCCGTCTGCTTTCCCGCACCAGGCGGCGG
AGTCAGAAAGATTTCCCCGGCCCGGCTGCCCGCCCACGAAACGGTTTTCGCCATGACGGTCCACAAGAGCCAGGGGTCCG
AGTTCGACCGGATTCTGCTGGTGCTCCCCCCCTTCGACAGTCCCGTGCTCACGCGGGAACTGGTCTACACGGGACTCACC
CGCGCCCGGACCGGTGCGGTCATCTGGGCGGACGAGGAGATCCTGCGGTCCGCTGCGGCGCGGAGGAGCGAACGGCGGTC
GGGCCTGCGGGAAGCGTTGTGGGGATGA

Upstream 100 bases:

>100_bases
ATCCCGAACGCCCCGCCCTGGGGGTCTATCATGACCTGCCGCGGCCCGACCTAGTGCGGGCATTGACCGACTGCCTCGCC
GGGCGGGAAGGAGGAGCGCC

Downstream 100 bases:

>100_bases
TGGGGTGATGGGGGGCGCGGCCGGACAGCCGCGCCGGATCAGTGACCGCCGGAGAGGGGGACGTCGAAGGTGCGGCCGTC
CTTGGAGAAGCGGACCTTGC

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 595; Mature: 594

Protein sequence:

>595_residues
MSADDLQFRDIDACFADFLCRLAGGRNDDLHRAAMHASAAVGAGHVCLHLDEAFGSNGAALAVTLRALPVVGPPGGRTPL
ILDEKNRLYLYRYWNYEYLVAEFIKQKSAELRPVSLPLLRAGIDRIFGPKGDDAVDWQRVAAAAAVRSGFCVISGGPGTG
KTSTVVSILALLLEQAGEEGAGIALAAPTGKAAARLGDSIRDARQRLAAVTPVAERIPGQVSTIHRLLGVIPGSVRFRHD
RHNPLPHRVVVVDEASMVPLPLMARLVEALAPSARLILLGDRDQLASVEAGAVLGDICDTGRAHRFSAPFREFIRDAASE
EIEGEAGDDGNDQPGTPADSLVILRRNYRFGAASAIGAASAAVNEGDGDRLMALVSGEGMDGGVALRPVPPAERLAGALA
ESVVAGYGEYLGQADPEQALACFDRFRVLCAVRQGEYGVQGLNRAIERVLARQGLIDADRVWYPGRPVMVTVNDYGLGLF
NGDIGLAVADPAFSGGLAVCFPAPGGGVRKISPARLPAHETVFAMTVHKSQGSEFDRILLVLPPFDSPVLTRELVYTGLT
RARTGAVIWADEEILRSAAARRSERRSGLREALWG

Sequences:

>Translated_595_residues
MSADDLQFRDIDACFADFLCRLAGGRNDDLHRAAMHASAAVGAGHVCLHLDEAFGSNGAALAVTLRALPVVGPPGGRTPL
ILDEKNRLYLYRYWNYEYLVAEFIKQKSAELRPVSLPLLRAGIDRIFGPKGDDAVDWQRVAAAAAVRSGFCVISGGPGTG
KTSTVVSILALLLEQAGEEGAGIALAAPTGKAAARLGDSIRDARQRLAAVTPVAERIPGQVSTIHRLLGVIPGSVRFRHD
RHNPLPHRVVVVDEASMVPLPLMARLVEALAPSARLILLGDRDQLASVEAGAVLGDICDTGRAHRFSAPFREFIRDAASE
EIEGEAGDDGNDQPGTPADSLVILRRNYRFGAASAIGAASAAVNEGDGDRLMALVSGEGMDGGVALRPVPPAERLAGALA
ESVVAGYGEYLGQADPEQALACFDRFRVLCAVRQGEYGVQGLNRAIERVLARQGLIDADRVWYPGRPVMVTVNDYGLGLF
NGDIGLAVADPAFSGGLAVCFPAPGGGVRKISPARLPAHETVFAMTVHKSQGSEFDRILLVLPPFDSPVLTRELVYTGLT
RARTGAVIWADEEILRSAAARRSERRSGLREALWG
>Mature_594_residues
SADDLQFRDIDACFADFLCRLAGGRNDDLHRAAMHASAAVGAGHVCLHLDEAFGSNGAALAVTLRALPVVGPPGGRTPLI
LDEKNRLYLYRYWNYEYLVAEFIKQKSAELRPVSLPLLRAGIDRIFGPKGDDAVDWQRVAAAAAVRSGFCVISGGPGTGK
TSTVVSILALLLEQAGEEGAGIALAAPTGKAAARLGDSIRDARQRLAAVTPVAERIPGQVSTIHRLLGVIPGSVRFRHDR
HNPLPHRVVVVDEASMVPLPLMARLVEALAPSARLILLGDRDQLASVEAGAVLGDICDTGRAHRFSAPFREFIRDAASEE
IEGEAGDDGNDQPGTPADSLVILRRNYRFGAASAIGAASAAVNEGDGDRLMALVSGEGMDGGVALRPVPPAERLAGALAE
SVVAGYGEYLGQADPEQALACFDRFRVLCAVRQGEYGVQGLNRAIERVLARQGLIDADRVWYPGRPVMVTVNDYGLGLFN
GDIGLAVADPAFSGGLAVCFPAPGGGVRKISPARLPAHETVFAMTVHKSQGSEFDRILLVLPPFDSPVLTRELVYTGLTR
ARTGAVIWADEEILRSAAARRSERRSGLREALWG

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=604, Percent_Identity=43.3774834437086, Blast_Score=387, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 63172; Mature: 63041

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADDLQFRDIDACFADFLCRLAGGRNDDLHRAAMHASAAVGAGHVCLHLDEAFGSNGAA
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCE
LAVTLRALPVVGPPGGRTPLILDEKNRLYLYRYWNYEYLVAEFIKQKSAELRPVSLPLLR
EEEEEECCEEECCCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHH
AGIDRIFGPKGDDAVDWQRVAAAAAVRSGFCVISGGPGTGKTSTVVSILALLLEQAGEEG
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
AGIALAAPTGKAAARLGDSIRDARQRLAAVTPVAERIPGQVSTIHRLLGVIPGSVRFRHD
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHCCCCCEEEECC
RHNPLPHRVVVVDEASMVPLPLMARLVEALAPSARLILLGDRDQLASVEAGAVLGDICDT
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCHHHHHHHCC
GRAHRFSAPFREFIRDAASEEIEGEAGDDGNDQPGTPADSLVILRRNYRFGAASAIGAAS
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
AAVNEGDGDRLMALVSGEGMDGGVALRPVPPAERLAGALAESVVAGYGEYLGQADPEQAL
HHCCCCCCCEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ACFDRFRVLCAVRQGEYGVQGLNRAIERVLARQGLIDADRVWYPGRPVMVTVNDYGLGLF
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEECCCEEEE
NGDIGLAVADPAFSGGLAVCFPAPGGGVRKISPARLPAHETVFAMTVHKSQGSEFDRILL
ECCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEE
VLPPFDSPVLTRELVYTGLTRARTGAVIWADEEILRSAAARRSERRSGLREALWG
EECCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SADDLQFRDIDACFADFLCRLAGGRNDDLHRAAMHASAAVGAGHVCLHLDEAFGSNGAA
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCE
LAVTLRALPVVGPPGGRTPLILDEKNRLYLYRYWNYEYLVAEFIKQKSAELRPVSLPLLR
EEEEEECCEEECCCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHH
AGIDRIFGPKGDDAVDWQRVAAAAAVRSGFCVISGGPGTGKTSTVVSILALLLEQAGEEG
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
AGIALAAPTGKAAARLGDSIRDARQRLAAVTPVAERIPGQVSTIHRLLGVIPGSVRFRHD
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHCCCCCEEEECC
RHNPLPHRVVVVDEASMVPLPLMARLVEALAPSARLILLGDRDQLASVEAGAVLGDICDT
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCHHHHHHHCC
GRAHRFSAPFREFIRDAASEEIEGEAGDDGNDQPGTPADSLVILRRNYRFGAASAIGAAS
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
AAVNEGDGDRLMALVSGEGMDGGVALRPVPPAERLAGALAESVVAGYGEYLGQADPEQAL
HHCCCCCCCEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ACFDRFRVLCAVRQGEYGVQGLNRAIERVLARQGLIDADRVWYPGRPVMVTVNDYGLGLF
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEECCCEEEE
NGDIGLAVADPAFSGGLAVCFPAPGGGVRKISPARLPAHETVFAMTVHKSQGSEFDRILL
ECCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEE
VLPPFDSPVLTRELVYTGLTRARTGAVIWADEEILRSAAARRSERRSGLREALWG
EECCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]