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The map label for this gene is yohD [H]

Identifier: 39996574

GI number: 39996574

Start: 1615949

End: 1616563

Strand: Direct

Name: yohD [H]

Synonym: GSU1474

Alternate gene names: 39996574

Gene position: 1615949-1616563 (Clockwise)

Preceding gene: 39996573

Following gene: 39996575

Centisome position: 42.37

GC content: 55.28

Gene sequence:

>615_bases
GTGCAGGAATTCCTCGGCCAATATCTGACAACCTACGGTTACGGAGTGCTCTTTGTCTGGACCTTCCTTGAGGGCGAGGC
AGGGCTCATTCTCGCGGGTTTTCTTGCGTTCCAGGGGTATCTGGATATCGGGGGGGTCATTCTGACCGCCCTTGGAGGTG
CGTTTGCCGGGGATCAGTTCTACTTTTACCTGGGACGCTGGAAAGGGCCCTGGCTGCTGAAGGTGTTCACCCTTATCGCC
CGCAAGTTCCGCAAGGCCCTCCGGCTTATCGAACGTTACGGCACCTTTGTTGCCTTTGTTTCGCGTTACACCTACGGTTT
CAGAATCATCTTGCCGATAATTCTCGGCATGACCACGTTTCCCGCCCGGCGGTTCCTCTGGCTGAATCTCTGCAGTGCTT
TTCTTTGGGCAGTGCTATTTTCACTGGCGGGTTACTTTTTCGGCAAAAGCGCTTCGCTCTTCGTAGAGGACGTGAGCCGG
TACGAGTCGCATCTGCTGGCAATTCTTGCAGGGCTTGTCTTCTGCATGTGGCTGTTTCACTTTATCCATGCCCGCATGAG
AAGGAGACCCGCCCGTGAACGGCTCAGGCGAATGAGGCAACGGGAGTTCGATTGA

Upstream 100 bases:

>100_bases
TCTCACATCACGTGGAGAAAAGGGCTGGCAAAGCCCTTTTCTCTTTTGCGGGCCACGTCACGATGCCGGAAAAGCGTGGT
ACACTCCTCTCGGAGGCTGC

Downstream 100 bases:

>100_bases
TGGGAGGAATGAAGAACGATGTCGGATCATGAAGTGACCGGAGGCGTTTCCCTGAAGGAGCGGGTCGCCATAGTACTGGT
GGAGCCGCAGAGCCCCGGCA

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MQEFLGQYLTTYGYGVLFVWTFLEGEAGLILAGFLAFQGYLDIGGVILTALGGAFAGDQFYFYLGRWKGPWLLKVFTLIA
RKFRKALRLIERYGTFVAFVSRYTYGFRIILPIILGMTTFPARRFLWLNLCSAFLWAVLFSLAGYFFGKSASLFVEDVSR
YESHLLAILAGLVFCMWLFHFIHARMRRRPARERLRRMRQREFD

Sequences:

>Translated_204_residues
MQEFLGQYLTTYGYGVLFVWTFLEGEAGLILAGFLAFQGYLDIGGVILTALGGAFAGDQFYFYLGRWKGPWLLKVFTLIA
RKFRKALRLIERYGTFVAFVSRYTYGFRIILPIILGMTTFPARRFLWLNLCSAFLWAVLFSLAGYFFGKSASLFVEDVSR
YESHLLAILAGLVFCMWLFHFIHARMRRRPARERLRRMRQREFD
>Mature_204_residues
MQEFLGQYLTTYGYGVLFVWTFLEGEAGLILAGFLAFQGYLDIGGVILTALGGAFAGDQFYFYLGRWKGPWLLKVFTLIA
RKFRKALRLIERYGTFVAFVSRYTYGFRIILPIILGMTTFPARRFLWLNLCSAFLWAVLFSLAGYFFGKSASLFVEDVSR
YESHLLAILAGLVFCMWLFHFIHARMRRRPARERLRRMRQREFD

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=189, Percent_Identity=29.6296296296296, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23822; Mature: 23822

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEFLGQYLTTYGYGVLFVWTFLEGEAGLILAGFLAFQGYLDIGGVILTALGGAFAGDQF
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH
YFYLGRWKGPWLLKVFTLIARKFRKALRLIERYGTFVAFVSRYTYGFRIILPIILGMTTF
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PARRFLWLNLCSAFLWAVLFSLAGYFFGKSASLFVEDVSRYESHLLAILAGLVFCMWLFH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIHARMRRRPARERLRRMRQREFD
HHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQEFLGQYLTTYGYGVLFVWTFLEGEAGLILAGFLAFQGYLDIGGVILTALGGAFAGDQF
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH
YFYLGRWKGPWLLKVFTLIARKFRKALRLIERYGTFVAFVSRYTYGFRIILPIILGMTTF
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PARRFLWLNLCSAFLWAVLFSLAGYFFGKSASLFVEDVSRYESHLLAILAGLVFCMWLFH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIHARMRRRPARERLRRMRQREFD
HHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]