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The map label for this gene is rpfG [H]

Identifier: 39996571

GI number: 39996571

Start: 1612857

End: 1614032

Strand: Direct

Name: rpfG [H]

Synonym: GSU1471

Alternate gene names: 39996571

Gene position: 1612857-1614032 (Clockwise)

Preceding gene: 39996570

Following gene: 39996572

Centisome position: 42.29

GC content: 55.36

Gene sequence:

>1176_bases
ATGACGCTGGAGCTCTGCAGATTGTCGTTGCAGCAGACGCAGGAACTCCTGAGGCTCACTGATGCCACGCTCAAGAACAT
ATGCTCTCGCAGGTTTTCCGGTGAGGAACTCTACTCCGAGGCGATACGGCGGGTTCTCGGTGGTGGCGGCAAGCGGGGAC
CGGAAAGTATTTTTCTCCTCATTGACGGCATTGGTGGTACGAGCAGAGGATGGATCTTTCAGCTCCAAGCAGGAGAGTTG
GTAAGAAGTTCAGATGAAATTCTCGTAGATGCCGACTCGGTTTATTCACTGGGCCGCCTCGGTAGCGAGGTTCTCGTGTC
GAACTGGCGTGAGAGCTTCGAGTCGATTGAGCGCTATCAGGTAATCTTTCATCCCGACATTGTCAAACATATAGCAAAGC
CTATCAGGAACTTTGTCGCATGTCAGATCAGCGGCGAGAGTAATGGTGCGCTCCTTGCATTTAATTACGCTGGGGAAGCC
ACAGAGTACGACGGCGATGTGCTTCGCGGACTGTCGGTTGTCATTGGCTCCCTTGTCACGCTGTCGGTGATGGTTCGCGA
AACCGAGCACGCCTTCATTTACACCATCGAGGCATTGGCCCGGGCGTGCGAGGCGGCCGAGGAGAGCACGGGTGATCATA
TTGTACGGGTAAATCGCTATGCCGGAGCCCTTGCCGCCCATATGGATCTCTCTCCCGACTTTGTCGAGGTGATTTCCTAT
TCAGCCCAGATGCACGACGTGGGGAAGATTCGGGTTCCGACGGCTATCCTCCTGAAGCCCGGCCCCCTTGATGAGGCTGA
AGAACGGGTTATGCGCCTTCACCCGGAATTCGGGGAGCAGATTCTGGGTGATTCTCCCCGTCTGAGCGTGGCACGGGAGA
TTGCTCTGAGTCATCATGAGAATTGGGATGGAAGCGGGTATCCCCGAGGCTTGCAGGGTGAAGCCATTCCGCTGGCCGGT
AGAATCGTGAAGCTTGCGGATGTCTATGATGCACTCCGTTCCAGGCGCAGTTATAAAAAGGCCTTGAGCCACGCAGAAGC
GCGCGCTGTCTTCTTGAACGGCGATGAGCGGATCACGCCACGCAGTCATTTCGACCCTCGGGTTCTTGAGACGTTCTTTC
GCATAGAGCCTCTCTTTGAGCGAATCTACCAGAGTTCGCGCAACCAGCAAGTATAG

Upstream 100 bases:

>100_bases
TCTCGGCCAAATCCTGTTAATCCCTTGCGGGCCAAGGCATTATGGGGTATAACGTACGCTAAATGACGGTGCGTTGACCT
TTCTTGCCAGGAGTCCTGCC

Downstream 100 bases:

>100_bases
GGCGGCGTTGCTGTTCATGTGGGCCGCACGTGCATTTTTTACCTTGAAACTTTAGCATGACAAAGGAGATCGGAATGTTT
CTTCTTCCCAAAGGGAATCC

Product: HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MTLELCRLSLQQTQELLRLTDATLKNICSRRFSGEELYSEAIRRVLGGGGKRGPESIFLLIDGIGGTSRGWIFQLQAGEL
VRSSDEILVDADSVYSLGRLGSEVLVSNWRESFESIERYQVIFHPDIVKHIAKPIRNFVACQISGESNGALLAFNYAGEA
TEYDGDVLRGLSVVIGSLVTLSVMVRETEHAFIYTIEALARACEAAEESTGDHIVRVNRYAGALAAHMDLSPDFVEVISY
SAQMHDVGKIRVPTAILLKPGPLDEAEERVMRLHPEFGEQILGDSPRLSVAREIALSHHENWDGSGYPRGLQGEAIPLAG
RIVKLADVYDALRSRRSYKKALSHAEARAVFLNGDERITPRSHFDPRVLETFFRIEPLFERIYQSSRNQQV

Sequences:

>Translated_391_residues
MTLELCRLSLQQTQELLRLTDATLKNICSRRFSGEELYSEAIRRVLGGGGKRGPESIFLLIDGIGGTSRGWIFQLQAGEL
VRSSDEILVDADSVYSLGRLGSEVLVSNWRESFESIERYQVIFHPDIVKHIAKPIRNFVACQISGESNGALLAFNYAGEA
TEYDGDVLRGLSVVIGSLVTLSVMVRETEHAFIYTIEALARACEAAEESTGDHIVRVNRYAGALAAHMDLSPDFVEVISY
SAQMHDVGKIRVPTAILLKPGPLDEAEERVMRLHPEFGEQILGDSPRLSVAREIALSHHENWDGSGYPRGLQGEAIPLAG
RIVKLADVYDALRSRRSYKKALSHAEARAVFLNGDERITPRSHFDPRVLETFFRIEPLFERIYQSSRNQQV
>Mature_390_residues
TLELCRLSLQQTQELLRLTDATLKNICSRRFSGEELYSEAIRRVLGGGGKRGPESIFLLIDGIGGTSRGWIFQLQAGELV
RSSDEILVDADSVYSLGRLGSEVLVSNWRESFESIERYQVIFHPDIVKHIAKPIRNFVACQISGESNGALLAFNYAGEAT
EYDGDVLRGLSVVIGSLVTLSVMVRETEHAFIYTIEALARACEAAEESTGDHIVRVNRYAGALAAHMDLSPDFVEVISYS
AQMHDVGKIRVPTAILLKPGPLDEAEERVMRLHPEFGEQILGDSPRLSVAREIALSHHENWDGSGYPRGLQGEAIPLAGR
IVKLADVYDALRSRRSYKKALSHAEARAVFLNGDERITPRSHFDPRVLETFFRIEPLFERIYQSSRNQQV

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 43584; Mature: 43453

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLELCRLSLQQTQELLRLTDATLKNICSRRFSGEELYSEAIRRVLGGGGKRGPESIFLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
IDGIGGTSRGWIFQLQAGELVRSSDEILVDADSVYSLGRLGSEVLVSNWRESFESIERYQ
EECCCCCCCCEEEEEECCHHHCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
VIFHPDIVKHIAKPIRNFVACQISGESNGALLAFNYAGEATEYDGDVLRGLSVVIGSLVT
EEECHHHHHHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
LSVMVRETEHAFIYTIEALARACEAAEESTGDHIVRVNRYAGALAAHMDLSPDFVEVISY
HHHHHHHCCCHHEEEHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHH
SAQMHDVGKIRVPTAILLKPGPLDEAEERVMRLHPEFGEQILGDSPRLSVAREIALSHHE
HHHHHCCCCEECCEEEEECCCCCCHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHCC
NWDGSGYPRGLQGEAIPLAGRIVKLADVYDALRSRRSYKKALSHAEARAVFLNGDERITP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC
RSHFDPRVLETFFRIEPLFERIYQSSRNQQV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TLELCRLSLQQTQELLRLTDATLKNICSRRFSGEELYSEAIRRVLGGGGKRGPESIFLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
IDGIGGTSRGWIFQLQAGELVRSSDEILVDADSVYSLGRLGSEVLVSNWRESFESIERYQ
EECCCCCCCCEEEEEECCHHHCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
VIFHPDIVKHIAKPIRNFVACQISGESNGALLAFNYAGEATEYDGDVLRGLSVVIGSLVT
EEECHHHHHHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
LSVMVRETEHAFIYTIEALARACEAAEESTGDHIVRVNRYAGALAAHMDLSPDFVEVISY
HHHHHHHCCCHHEEEHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHH
SAQMHDVGKIRVPTAILLKPGPLDEAEERVMRLHPEFGEQILGDSPRLSVAREIALSHHE
HHHHHCCCCEECCEEEEECCCCCCHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHCC
NWDGSGYPRGLQGEAIPLAGRIVKLADVYDALRSRRSYKKALSHAEARAVFLNGDERITP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC
RSHFDPRVLETFFRIEPLFERIYQSSRNQQV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]