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The map label for this gene is ycfF [C]

Identifier: 39996524

GI number: 39996524

Start: 1561021

End: 1561365

Strand: Direct

Name: ycfF [C]

Synonym: GSU1423

Alternate gene names: 39996524

Gene position: 1561021-1561365 (Clockwise)

Preceding gene: 39996523

Following gene: 39996525

Centisome position: 40.93

GC content: 57.97

Gene sequence:

>345_bases
ATGGACAGCTGCATCTTCTGTAAGATTGTCGACGGGACGATCCCCGCGAAAAAAGTATATGAAGATGAGGATATGGTCGC
CATTGAAGATATCAATCCCGTGGCCCCCCATCACCTTCTCCTGATACCGAAAAAGCACGTGGTCAATGCCCTTGACCTTA
CCCCGGAGGATGACCGGCTCGTGGGCCGCGTGTTCCGTGTTGCCGCGGAAATCGCCCGCCAGCGTGGCGTCGACGAGCGG
GGCTTCAGGATTGTTCAGAATTCCAATGCCGACGCCGGGCAGTCGGTCTTCCACATTCACTTTCATCTTCTGGCCGGCCG
CCACCTGGGATGGCCGCCGGGATAG

Upstream 100 bases:

>100_bases
GATCACCAGGTAATCCTCCTGGTCCACGATGAACGCTACCTGAAGGCACGGGGGGCGGATCTCTGGCACCGGGTCAAGAT
CGACACGAAAGGACAGCAGG

Downstream 100 bases:

>100_bases
CGTTCCACGAGAGGGGGACAATTGATGAAAAGCATAATGGTGCTGCTCCTTGTCGCTGTTCTGGTCCAGCCGGCCTTGGG
TGAGACCTACCGATGGATAG

Product: HIT family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MDSCIFCKIVDGTIPAKKVYEDEDMVAIEDINPVAPHHLLLIPKKHVVNALDLTPEDDRLVGRVFRVAAEIARQRGVDER
GFRIVQNSNADAGQSVFHIHFHLLAGRHLGWPPG

Sequences:

>Translated_114_residues
MDSCIFCKIVDGTIPAKKVYEDEDMVAIEDINPVAPHHLLLIPKKHVVNALDLTPEDDRLVGRVFRVAAEIARQRGVDER
GFRIVQNSNADAGQSVFHIHFHLLAGRHLGWPPG
>Mature_114_residues
MDSCIFCKIVDGTIPAKKVYEDEDMVAIEDINPVAPHHLLLIPKKHVVNALDLTPEDDRLVGRVFRVAAEIARQRGVDER
GFRIVQNSNADAGQSVFHIHFHLLAGRHLGWPPG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=111, Percent_Identity=43.2432432432432, Blast_Score=102, Evalue=8e-23,
Organism=Homo sapiens, GI14211923, Length=111, Percent_Identity=40.5405405405405, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787346, Length=109, Percent_Identity=44.0366972477064, Blast_Score=94, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17506713, Length=113, Percent_Identity=40.7079646017699, Blast_Score=102, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6320078, Length=116, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28574010, Length=113, Percent_Identity=38.0530973451327, Blast_Score=89, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24581222, Length=113, Percent_Identity=38.0530973451327, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12726; Mature: 12726

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSCIFCKIVDGTIPAKKVYEDEDMVAIEDINPVAPHHLLLIPKKHVVNALDLTPEDDRL
CCCEEEEEEECCCCCHHHEECCCCEEEEECCCCCCCCEEEEECHHHHCEEECCCCCCHHH
VGRVFRVAAEIARQRGVDERGFRIVQNSNADAGQSVFHIHFHLLAGRHLGWPPG
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MDSCIFCKIVDGTIPAKKVYEDEDMVAIEDINPVAPHHLLLIPKKHVVNALDLTPEDDRL
CCCEEEEEEECCCCCHHHEECCCCEEEEECCCCCCCCEEEEECHHHHCEEECCCCCCHHH
VGRVFRVAAEIARQRGVDERGFRIVQNSNADAGQSVFHIHFHLLAGRHLGWPPG
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]